View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_high_1 (Length: 848)
Name: NF16654_high_1
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 754; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 17 - 848
Target Start/End: Original strand, 283953 - 284777
Alignment:
| Q |
17 |
gtaaactgagtgtaacctcctttctctaagatctgcgctgcacccttgaaatccttcaaaaactcaatcaacatatcacatttaactccacactcatcat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
283953 |
gtaaactgagtgtaacctcctttctctaagatctgcgctgcacccttgaaatccttcaaaaactcaatcaacatatcacatttaactccacactcatcat |
284052 |
T |
|
| Q |
117 |
tactattggtccacaactcatactcgacacgatcatcaggatgaggaacagcctctctccagtcaagattaacattgaccatatccccaccactaatggc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
284053 |
tactattggtccacaactcatactcgacacgatcatcaggatgaggaacagcctctctccagtcaagattaacattgaccatatccccaccactaatggc |
284152 |
T |
|
| Q |
217 |
atccttcaacttctgaccaaaagtttttccaataagagcagagggtattgtaatattctcaatatatttagcagatgagacatcctcttcgggtgtgtcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
284153 |
atccttcaacttctgaccaaaagtttttccaataagagcagagggtattgtaatattctcaatatatttagcagatgagacatcctcttcgggtgtgtcc |
284252 |
T |
|
| Q |
317 |
atagtaatcaagggctcctcaatatcatcggcaacgagtaccgcagaagctccagccttctgagcattccaaaccttcaaagcaaagaaacaacctgcaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
284253 |
atagtaatcaagggctcctcaatatcatcggcaacgagtaccgcagaagctccagccttctgagcattccaaaccttcaaagcaaagaaacaacctgcaa |
284352 |
T |
|
| Q |
417 |
aggaacaaaagtaagcacacagagtgaagacccattttgatctgtcatagtcattttagtttagtccctattataaaaatagcatggagtaatttggtat |
516 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
284353 |
aggaacaaaagtaagcacacagagtgaagatccattttgatctgtcatagtcat-----tttagtcccaattataaaaatagcatggagtaatttggtat |
284447 |
T |
|
| Q |
517 |
tattatttgtgagatactaaattgggctaagggatgaaatataatgatatctaggttttgaaggtaaagaat-gaggcatgcaaataaaagtaatgaatt |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| |
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| T |
284448 |
tattatttgtgagatactaaattgggctaagggatgaaatataatgatatctaggttttgaagggaaagaatggaagcatgcaaataaaagtaatgaatt |
284547 |
T |
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| Q |
616 |
gtatatgtaactnnnnnnnggaaagaaagtaactaacttccacgatcaaggagaaggatggtaggaagagcaccgggtttggatttgaaagatgaagaat |
715 |
Q |
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| T |
284548 |
gtatatgtaactaaaaaaaggaaagaaagtaactaacttccacgatcaaggagaaggatggtaggaagagcaccgggtttggatttgaaagatgaaga-- |
284645 |
T |
|
| Q |
716 |
catcatcaaagtctttacaacccttattgttatctttaggataaacaacattaccagccatgctaccaccatattgaggaatcccaaagttaccaatcgc |
815 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
284646 |
-atcatcaaagtctttacaacccttattgttatctttaggataaacaacattaccagccatgctaccaccatattgaggaatcccaaagttaccaatcgc |
284744 |
T |
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| Q |
816 |
actgtcatgttttcctttgattttatcaggtga |
848 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
284745 |
actgtcatgttttcctttgattttatcaggtga |
284777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 3e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 29 - 416
Target Start/End: Complemental strand, 48133727 - 48133340
Alignment:
| Q |
29 |
taacctcctttctctaagatctgcgctgcacccttgaaatccttcaaaaactcaatcaacatatcacatttaactccacactcatcattactattggtcc |
128 |
Q |
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||||| ||||||||||| || || || |||||||| |||||||||| ||| || ||||||||||| ||||||||||||||||||||||| || ||||||| |
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| T |
48133727 |
taaccacctttctctaatatttgtgccgcacccttaaaatccttcacaaattccatcaacatatcgcatttaactccacactcatcattgctgttggtcc |
48133628 |
T |
|
| Q |
129 |
acaactcatactcgacacgatcatcaggatgaggaacagcctctctccagtcaagattaacattgaccatatccccaccactaatggcatccttcaactt |
228 |
Q |
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| T |
48133627 |
acagctcatactccacacgatcatctgggtgagggacggcctctctccaatcaagatttacgttaaccatatccccaccacttatggctttctttaattt |
48133528 |
T |
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| Q |
229 |
ctgaccaaaagtttttccaataagagcagagggtattgtaatattctcaatatatttagcagatgagacatcctcttcgggtgtgtccatagtaatcaag |
328 |
Q |
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| T |
48133527 |
ttcaccaaaattcttttcaatgagagccgatggtattgttatgttctctatatattttgcagatgatccatcctcctcaggtgtgtccatggttattaat |
48133428 |
T |
|
| Q |
329 |
ggctcctcaatatcatcggcaacgagtaccgcagaagctccagccttctgagcattccaaaccttcaaagcaaagaaacaacctgcaa |
416 |
Q |
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|| ||||||||||| ||||| || || | |||||||||||||||||| |||||||| || ||||||||||| || |||||||||| |
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| T |
48133427 |
ttttcttcaatatcatccgcaacaagaacagaagaagctccagccttctgggcattccacactttcaaagcaaaaaagcaacctgcaa |
48133340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 718 - 818
Target Start/End: Complemental strand, 48132563 - 48132463
Alignment:
| Q |
718 |
tcatcaaagtctttacaacccttattgttatctttaggataaacaacattaccagccatgctaccaccatattgaggaatcccaaagttaccaatcgcac |
817 |
Q |
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|||||||| |||||||||||||| | ||||| || ||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48132563 |
tcatcaaactctttacaacccttttgattatcctttggatacacaacgttcccagccatgctaccaccgtattgaggaatcccaaagttaccaatcgcac |
48132464 |
T |
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| Q |
818 |
t |
818 |
Q |
| |
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| T |
48132463 |
t |
48132463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 718 - 836
Target Start/End: Complemental strand, 46689173 - 46689056
Alignment:
| Q |
718 |
tcatcaaagtctttacaacccttattgttatctttaggataaacaacattaccagccatgctaccaccatattgaggaatcccaaagttaccaatcgcac |
817 |
Q |
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|||||||| ||| |||||||||| | ||||| || ||||| ||||| | ||| |||| |||||||| |||||||| ||||||||||||||||| | || |
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| T |
46689173 |
tcatcaaactctgtacaacccttttgattatcctttggatacacaacgtc-ccatccatactaccaccgtattgaggtatcccaaagttaccaattgtac |
46689075 |
T |
|
| Q |
818 |
tgtcatgttttcctttgat |
836 |
Q |
| |
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|||| | | |||||||||| |
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| T |
46689074 |
tgtcgtatgttcctttgat |
46689056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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