View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16654_high_15 (Length: 341)

Name: NF16654_high_15
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16654_high_15
NF16654_high_15
[»] chr4 (22 HSPs)
chr4 (7-338)||(53865247-53865579)
chr4 (7-51)||(2124339-2124384)
chr4 (7-51)||(36309621-36309666)
chr4 (7-43)||(9967685-9967721)
chr4 (7-50)||(33819687-33819731)
chr4 (7-52)||(21995664-21995710)
chr4 (7-52)||(41025055-41025101)
chr4 (7-43)||(1492675-1492712)
chr4 (7-43)||(6841824-6841861)
chr4 (7-43)||(8157293-8157330)
chr4 (7-43)||(8165765-8165802)
chr4 (7-55)||(10473652-10473701)
chr4 (7-43)||(17109922-17109959)
chr4 (7-43)||(25715646-25715683)
chr4 (7-43)||(25715731-25715768)
chr4 (7-43)||(31763112-31763149)
chr4 (7-43)||(36309419-36309456)
chr4 (7-43)||(36924244-36924281)
chr4 (7-51)||(37059706-37059751)
chr4 (7-43)||(54895407-54895444)
chr4 (7-43)||(54895587-54895624)
chr4 (7-42)||(51076901-51076937)
[»] chr8 (7 HSPs)
chr8 (7-50)||(32644043-32644086)
chr8 (7-50)||(18757332-18757376)
chr8 (7-43)||(1672935-1672972)
chr8 (7-43)||(15808888-15808925)
chr8 (7-43)||(17792896-17792933)
chr8 (7-43)||(27506709-27506746)
chr8 (7-43)||(35448614-35448651)
[»] chr5 (9 HSPs)
chr5 (7-50)||(7286958-7287001)
chr5 (7-56)||(3340580-3340630)
chr5 (7-52)||(39086511-39086557)
chr5 (7-52)||(11376585-11376630)
chr5 (7-43)||(11660986-11661023)
chr5 (7-43)||(23155528-23155565)
chr5 (7-51)||(35662237-35662282)
chr5 (7-43)||(39166344-39166381)
chr5 (7-43)||(39861784-39861821)
[»] chr3 (8 HSPs)
chr3 (7-56)||(50416568-50416618)
chr3 (11-52)||(12974006-12974048)
chr3 (7-52)||(36185909-36185955)
chr3 (7-43)||(8036803-8036840)
chr3 (7-51)||(36185721-36185766)
chr3 (7-55)||(47225852-47225901)
chr3 (7-43)||(47924370-47924407)
chr3 (7-43)||(50416483-50416520)
[»] chr1 (14 HSPs)
chr1 (7-51)||(42134137-42134182)
chr1 (7-51)||(45849103-45849148)
chr1 (7-49)||(9628603-9628646)
chr1 (6-43)||(9041054-9041092)
chr1 (7-43)||(10974636-10974673)
chr1 (7-43)||(14229175-14229212)
chr1 (7-55)||(17811287-17811336)
chr1 (7-43)||(17893075-17893112)
chr1 (7-43)||(17893277-17893314)
chr1 (7-51)||(18928959-18929004)
chr1 (7-51)||(29945420-29945465)
chr1 (7-43)||(33156995-33157032)
chr1 (7-43)||(18618969-18619005)
chr1 (7-43)||(25888924-25888960)
[»] chr2 (11 HSPs)
chr2 (7-43)||(31711703-31711739)
chr2 (7-52)||(31783787-31783833)
chr2 (7-51)||(16111709-16111754)
chr2 (7-43)||(19246665-19246702)
chr2 (7-43)||(20661399-20661436)
chr2 (7-43)||(24183601-24183638)
chr2 (7-51)||(30777290-30777335)
chr2 (7-43)||(34726607-34726644)
chr2 (7-51)||(37867359-37867404)
chr2 (7-43)||(42364495-42364532)
chr2 (7-51)||(42364697-42364742)
[»] chr6 (8 HSPs)
chr6 (7-53)||(10588957-10589004)
chr6 (13-52)||(26713184-26713223)
chr6 (7-52)||(10698571-10698617)
chr6 (7-51)||(19281278-19281323)
chr6 (7-43)||(19284374-19284411)
chr6 (7-43)||(21384993-21385030)
chr6 (7-43)||(22857491-22857528)
chr6 (7-43)||(22857681-22857718)
[»] scaffold0516 (1 HSPs)
scaffold0516 (7-43)||(1252-1289)
[»] scaffold0249 (2 HSPs)
scaffold0249 (7-43)||(23547-23584)
scaffold0249 (7-43)||(23739-23776)
[»] scaffold0129 (1 HSPs)
scaffold0129 (7-43)||(20124-20161)
[»] scaffold0102 (1 HSPs)
scaffold0102 (7-43)||(33619-33656)
[»] scaffold0009 (1 HSPs)
scaffold0009 (7-43)||(51908-51945)
[»] scaffold0004 (1 HSPs)
scaffold0004 (7-43)||(96002-96039)
[»] chr7 (5 HSPs)
chr7 (7-43)||(26945718-26945755)
chr7 (7-51)||(34227671-34227716)
chr7 (7-43)||(44426601-44426638)
chr7 (7-51)||(44426803-44426848)
chr7 (7-43)||(46004539-46004576)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 7 - 338
Target Start/End: Original strand, 53865247 - 53865579
Alignment:
Q  7 ttatgcagggtgcataaggatttc-ttatgcaccataagcgcgcccaaaatgcactacgctagggtaatttcttggtaactagtaatttcgcttgaacgc 105  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53865247 ttatgcagggtgcataaggatttccttatgcaccataaccgcgcccaaaatgcactacgctagggtaatttcttggtaactagtaatttcgctcgaacgc 53865346  T
Q  106 aatcactttttcttatttgaattttagatttctgcttgcacttgttttatccatggcaacagccctttctgcaattcgtattgttgtcgccggcgacaag 205  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  53865347 aatcactttttcttatttgaattttagatttctgcttgcgcttgctttatccatggcaacagacctttctgcaattcgtattgttgtcgccggcgacaag 53865446  T
Q  206 gaaccggcaagtctagtctaatcactacttttgccaccggaaaccctgttaaggatgtgccgacggtactcttatccacccgactgcctaaacatctgtc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  53865447 gaaccggcaagtctagtctaatcactacttttgccaccggaaatcctgttaaggatgtgccgccggtactcttatccacccgactgcctaaacatctgtc 53865546  T
Q  306 tccggatggcgtacgaatcacaatcatcgacac 338  Q
    |||||||||||||||||||||||||||||||||    
T  53865547 tccggatggcgtacgaatcacaatcatcgacac 53865579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 2124384 - 2124339
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 51  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||    
T  2124384 ttatgcagggtgcataaggatttccttatgcaccataaccgcgccc 2124339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 36309621 - 36309666
Alignment:
Q  7 ttatgcagggtgcataagga-tttcttatgcaccataagcgcgccc 51  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||    
T  36309621 ttatgcagggtgcataaggattttcttatgcaccataaccgcgccc 36309666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 9967721 - 9967685
Alignment:
Q  7 ttatgcagggtgcataaggatttcttatgcaccataa 43  Q
    |||||||||||||||||||||| ||||||||||||||    
T  9967721 ttatgcagggtgcataaggattccttatgcaccataa 9967685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 33819731 - 33819687
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgcc 50  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||    
T  33819731 ttatgcagggtgcataaggatttccttatgcaccataaccgcgcc 33819687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 21995710 - 21995664
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccca 52  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||    
T  21995710 ttatgcagggtgcataaggatttccttatgcaccataaccgcaccca 21995664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 41025101 - 41025055
Alignment:
Q  7 ttatgcagggtgcataaggatttc-ttatgcaccataagcgcgccca 52  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||||    
T  41025101 ttatgcagggtgcataaggatttcattatgtaccataaccgcgccca 41025055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 1492712 - 1492675
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  1492712 ttatgcagggtgcataaggatttccttatgcaccataa 1492675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 6841861 - 6841824
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  6841861 ttatgcagggtgcataaggatttccttatgcaccataa 6841824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 8157293 - 8157330
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  8157293 ttatgcagggtgcataaggatttccttatgcaccataa 8157330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 8165802 - 8165765
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  8165802 ttatgcagggtgcataaggatttccttatgcaccataa 8165765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 10473652 - 10473701
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaaaa 55  Q
    ||||||| ||||||||||||||| |||||||||||||| ||| |||||||    
T  10473652 ttatgcacggtgcataaggatttccttatgcaccataaccgctcccaaaa 10473701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 17109922 - 17109959
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  17109922 ttatgcagggtgcataaggatttccttatgcaccataa 17109959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 25715683 - 25715646
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  25715683 ttatgcagggtgcataaggatttccttatgcaccataa 25715646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 25715731 - 25715768
Alignment:
Q  7 ttatgcagggtgcataagga-tttcttatgcaccataa 43  Q
    |||||||||||||||||||| |||||||||||||||||    
T  25715731 ttatgcagggtgcataaggattttcttatgcaccataa 25715768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 31763112 - 31763149
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  31763112 ttatgcagggtgcataaggatttccttatgcaccataa 31763149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 36309456 - 36309419
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  36309456 ttatgcagggtgcataaggatttccttatgcaccataa 36309419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 36924281 - 36924244
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  36924281 ttatgcagggtgcataaggatttccttatgcaccataa 36924244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 37059751 - 37059706
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 51  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||||    
T  37059751 ttatgcaaggtgcataaggatttccttatgcaccataaccgcgccc 37059706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 54895444 - 54895407
Alignment:
Q  7 ttatgcagggtgcataagga-tttcttatgcaccataa 43  Q
    |||||||||||||||||||| |||||||||||||||||    
T  54895444 ttatgcagggtgcataaggattttcttatgcaccataa 54895407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 54895587 - 54895624
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  54895587 ttatgcagggtgcataaggatttccttatgcaccataa 54895624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 51076937 - 51076901
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccata 42  Q
    ||||||||||||||||||||||| |||||||||||||    
T  51076937 ttatgcagggtgcataaggatttccttatgcaccata 51076901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 32644086 - 32644043
Alignment:
Q  7 ttatgcagggtgcataaggatttcttatgcaccataagcgcgcc 50  Q
    |||||||||||||||||||||| |||||||||||||| ||||||    
T  32644086 ttatgcagggtgcataaggattccttatgcaccataaccgcgcc 32644043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 18757332 - 18757376
Alignment:
Q  7 ttatgcagggtgcataaggatttc-ttatgcaccataagcgcgcc 50  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||    
T  18757332 ttatgcagggtgcataaggatttctttatgcaccataaccgcgcc 18757376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 1672935 - 1672972
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  1672935 ttatgcagggtgcataaggatttccttatgcaccataa 1672972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 15808925 - 15808888
Alignment:
Q  7 ttatgcagggtgcataagga-tttcttatgcaccataa 43  Q
    |||||||||||||||||||| |||||||||||||||||    
T  15808925 ttatgcagggtgcataaggattttcttatgcaccataa 15808888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 17792896 - 17792933
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  17792896 ttatgcagggtgcataaggatttccttatgcaccataa 17792933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 27506746 - 27506709
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  27506746 ttatgcagggtgcataaggatttccttatgcaccataa 27506709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 35448614 - 35448651
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  35448614 ttatgcagggtgcataaggatttccttatgcaccataa 35448651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 7286958 - 7287001
Alignment:
Q  7 ttatgcagggtgcataaggatttcttatgcaccataagcgcgcc 50  Q
    |||||||||||||||||||||| |||||||||||||| ||||||    
T  7286958 ttatgcagggtgcataaggattccttatgcaccataaccgcgcc 7287001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 3340630 - 3340580
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaaaat 56  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||||    
T  3340630 ttatgcagggtgcataaggatttccttatgcaccataaccgcacccaaaat 3340580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 39086557 - 39086511
Alignment:
Q  7 ttatgcagggtgcataagga-tttcttatgcaccataagcgcgccca 52  Q
    |||||||||||||||||||| ||||||||||||||||| ||| ||||    
T  39086557 ttatgcagggtgcataaggattttcttatgcaccataaccgcaccca 39086511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 11376585 - 11376630
Alignment:
Q  7 ttatgcagggtgcataaggatttcttatgcaccataagcgcgccca 52  Q
    |||||||| ||||||||||||| ||||||||||||||  |||||||    
T  11376585 ttatgcagtgtgcataaggattccttatgcaccataactgcgccca 11376630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 11660986 - 11661023
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  11660986 ttatgcagggtgcataaggatttccttatgcaccataa 11661023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 23155565 - 23155528
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  23155565 ttatgcagggtgcataaggatttccttatgcaccataa 23155528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 35662237 - 35662282
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 51  Q
    |||||||||||||||||| |||| |||||||||||||| |||||||    
T  35662237 ttatgcagggtgcataagtatttccttatgcaccataaccgcgccc 35662282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 39166344 - 39166381
Alignment:
Q  7 ttatgcagggtgcataagga-tttcttatgcaccataa 43  Q
    |||||||||||||||||||| |||||||||||||||||    
T  39166344 ttatgcagggtgcataaggattttcttatgcaccataa 39166381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 39861784 - 39861821
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  39861784 ttatgcagggtgcataaggatttccttatgcaccataa 39861821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 50416568 - 50416618
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaaaat 56  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||||    
T  50416568 ttatgcagggtgcataaggatttccttatgcaccataaccgcacccaaaat 50416618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 12974048 - 12974006
Alignment:
Q  11 gcagggtgcataaggattt-cttatgcaccataagcgcgccca 52  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  12974048 gcagggtgcataaggatttccttatgcaccataaccgcgccca 12974006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 36185909 - 36185955
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccca 52  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||    
T  36185909 ttatgcagggtgcataaggatttccttatgcaccataaccgcaccca 36185955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 8036840 - 8036803
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  8036840 ttatgcagggtgcataaggatttccttatgcaccataa 8036803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 36185766 - 36185721
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 51  Q
    ||||||||| ||||||||||||| |||||||||||||| |||||||    
T  36185766 ttatgcaggatgcataaggatttccttatgcaccataaccgcgccc 36185721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 47225852 - 47225901
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaaaa 55  Q
    ||||||||||| ||||||||||| ||||||||||||||  ||||||||||    
T  47225852 ttatgcagggtacataaggatttccttatgcaccataactgcgcccaaaa 47225901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 47924370 - 47924407
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  47924370 ttatgcagggtgcataaggatttccttatgcaccataa 47924407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 50416520 - 50416483
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  50416520 ttatgcagggtgcataaggatttccttatgcaccataa 50416483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 42134137 - 42134182
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 51  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||    
T  42134137 ttatgcagggtgcataaggatttccttatgcaccataaccgcgccc 42134182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 45849148 - 45849103
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 51  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||    
T  45849148 ttatgcagggtgcataaggatttccttatgcaccataatcgcgccc 45849103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 9628603 - 9628646
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgc 49  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  9628603 ttatgcagggtgcataaggatttccttatgcaccataaccgcgc 9628646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 9041054 - 9041092
Alignment:
Q  6 attatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  9041054 attatgcagggtgcataaggatttccttatgcaccataa 9041092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 10974673 - 10974636
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  10974673 ttatgcagggtgcataaggatttccttatgcaccataa 10974636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 14229212 - 14229175
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  14229212 ttatgcagggtgcataaggatttccttatgcaccataa 14229175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 17811287 - 17811336
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaaaa 55  Q
    |||| |||||||||||||||||| |||||||||||||| |||||| ||||    
T  17811287 ttatacagggtgcataaggatttccttatgcaccataaccgcgccaaaaa 17811336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 17893112 - 17893075
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  17893112 ttatgcagggtgcataaggatttccttatgcaccataa 17893075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 17893277 - 17893314
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  17893277 ttatgcagggtgcataaggatttccttatgcaccataa 17893314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 18928959 - 18929004
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 51  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||||    
T  18928959 ttatgcagggtgcataaagatttccttatgcaccataaccgcgccc 18929004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 29945420 - 29945465
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 51  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||    
T  29945420 ttatgcagagtgcataaggatttccttatgcaccataaccgcgccc 29945465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 33157032 - 33156995
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  33157032 ttatgcagggtgcataaggatttccttatgcaccataa 33156995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 18618969 - 18619005
Alignment:
Q  7 ttatgcagggtgcataaggatttcttatgcaccataa 43  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  18618969 ttatgcacggtgcataaggattccttatgcaccataa 18619005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 25888960 - 25888924
Alignment:
Q  7 ttatgcagggtgcataaggatttcttatgcaccataa 43  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  25888960 ttatgcacggtgcataaggattccttatgcaccataa 25888924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 31711703 - 31711739
Alignment:
Q  7 ttatgcagggtgcataaggatttcttatgcaccataa 43  Q
    ||||||||||||||| |||||||||||||||||||||    
T  31711703 ttatgcagggtgcatgaggatttcttatgcaccataa 31711739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 31783833 - 31783787
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccca 52  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||    
T  31783833 ttatgcagggtgcataaggatttccttatgcaccataaccgcaccca 31783787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 16111709 - 16111754
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 51  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||||    
T  16111709 ttatgcagggtgcataaagatttccttatgcaccataaccgcgccc 16111754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 19246702 - 19246665
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  19246702 ttatgcagggtgcataaggatttccttatgcaccataa 19246665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 20661436 - 20661399
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  20661436 ttatgcagggtgcataaggatttccttatgcaccataa 20661399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 24183601 - 24183638
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  24183601 ttatgcagggtgcataaggatttccttatgcaccataa 24183638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 30777335 - 30777290
Alignment:
Q  7 ttatgcagggtgcataagga-tttcttatgcaccataagcgcgccc 51  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||||    
T  30777335 ttatgcagggtgcataaggatttttttatgcaccataaccgcgccc 30777290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 34726644 - 34726607
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  34726644 ttatgcagggtgcataaggatttccttatgcaccataa 34726607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 37867359 - 37867404
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 51  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||||    
T  37867359 ttatgcagggtgcataaggatttccttatgcaccgtaaccgcgccc 37867404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 42364532 - 42364495
Alignment:
Q  7 ttatgcagggtgcataagga-tttcttatgcaccataa 43  Q
    |||||||||||||||||||| |||||||||||||||||    
T  42364532 ttatgcagggtgcataaggattttcttatgcaccataa 42364495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 42364697 - 42364742
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 51  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||||    
T  42364697 ttatgcagggtgcataaggatttccttttgcaccataaccgcgccc 42364742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 10588957 - 10589004
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgcccaa 53  Q
    ||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  10588957 ttatgcagggtgcataaggatttccttatgcaccataaccgcacccaa 10589004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 26713184 - 26713223
Alignment:
Q  13 agggtgcataaggatttcttatgcaccataagcgcgccca 52  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  26713184 agggtgcataaggatttcttatgcaccataaccgcaccca 26713223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 10698617 - 10698571
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccca 52  Q
    |||||||||||||| |||||||| |||||||||||||| ||||||||    
T  10698617 ttatgcagggtgcacaaggatttccttatgcaccataaccgcgccca 10698571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 19281323 - 19281278
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 51  Q
    |||||||||||||| |||||||| |||||||||||||| |||||||    
T  19281323 ttatgcagggtgcacaaggatttccttatgcaccataaccgcgccc 19281278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 19284411 - 19284374
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  19284411 ttatgcagggtgcataaggatttccttatgcaccataa 19284374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 21384993 - 21385030
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  21384993 ttatgcagggtgcataaggatttccttatgcaccataa 21385030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 22857528 - 22857491
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  22857528 ttatgcagggtgcataaggatttccttatgcaccataa 22857491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 22857681 - 22857718
Alignment:
Q  7 ttatgcagggtgcataagga-tttcttatgcaccataa 43  Q
    |||||||||||||||||||| |||||||||||||||||    
T  22857681 ttatgcagggtgcataaggattttcttatgcaccataa 22857718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 1252 - 1289
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  1252 ttatgcagggtgcataaggatttccttatgcaccataa 1289  T

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Target: scaffold0249 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 23584 - 23547
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  23584 ttatgcagggtgcataaggatttccttatgcaccataa 23547  T

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Target: scaffold0249; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 23739 - 23776
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  23739 ttatgcagggtgcataaggatttccttatgcaccataa 23776  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 20124 - 20161
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  20124 ttatgcagggtgcataaggatttccttatgcaccataa 20161  T

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Target: scaffold0102 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 33656 - 33619
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  33656 ttatgcagggtgcataaggatttccttatgcaccataa 33619  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 51945 - 51908
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  51945 ttatgcagggtgcataaggatttccttatgcaccataa 51908  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 96039 - 96002
Alignment:
Q  7 ttatgcagggtgcataagga-tttcttatgcaccataa 43  Q
    |||||||||||||||||||| |||||||||||||||||    
T  96039 ttatgcagggtgcataaggattttcttatgcaccataa 96002  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 26945718 - 26945755
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  26945718 ttatgcagggtgcataaggatttccttatgcaccataa 26945755  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 34227716 - 34227671
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 51  Q
    ||||||||| ||||||||||||| |||||||||||||| |||||||    
T  34227716 ttatgcaggttgcataaggatttccttatgcaccataaccgcgccc 34227671  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 44426638 - 44426601
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  44426638 ttatgcagggtgcataaggatttccttatgcaccataa 44426601  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 44426803 - 44426848
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataagcgcgccc 51  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||||    
T  44426803 ttatgcagggtgcataaagatttccttatgcaccataaccgcgccc 44426848  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 46004539 - 46004576
Alignment:
Q  7 ttatgcagggtgcataaggattt-cttatgcaccataa 43  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  46004539 ttatgcagggtgcataaggatttccttatgcaccataa 46004576  T

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