View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_high_18 (Length: 318)
Name: NF16654_high_18
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 26 - 303
Target Start/End: Original strand, 9973676 - 9973958
Alignment:
| Q |
26 |
tctgaaaacttgtgggggtcctcatttcccaatacaagagcattaactttacaagcaaaagatgagacaggaaaatgactggctgaaagaaaaggttagt |
125 |
Q |
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| T |
9973676 |
tctgaaaacttgtgggggtcctcctttcccaatacaagagcattaactttacaagcaaaagatgagacaggaaaatgactggctgaaagaaaaggttagt |
9973775 |
T |
|
| Q |
126 |
aaatttctttcattgattatattttaattttaataaaatatcgattatannnnnnnnnnnnntgg----ttcttgca-gacaatcctcaccggccaacct |
220 |
Q |
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| T |
9973776 |
aaatttctttcattgattatattttaattttaataaaatatcgattataacacacacacacatggttctttcttgcacgacaatcctcaccggccaacct |
9973875 |
T |
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| Q |
221 |
ctcactagttaactccaatacaataataaaattatacttcttactttttatgaaaagatgacaaaatataaaattgaatgatt |
303 |
Q |
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| T |
9973876 |
ctcactagttaactccaatacaataataaaattatacttcttactttttatgaaaagatgacaaaatataaaattgaatgatt |
9973958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 9952408 - 9952270
Alignment:
| Q |
36 |
tgtgggggtcctcatttcccaatacaagagcattaactttacaagcaaaagatgagacaggaaaatgactggctgaaagaaaaggttagtaaatttcttt |
135 |
Q |
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| T |
9952408 |
tgtgggggttctcctttccaaatataatagcattaactttacaagcaaaagatgagacaggaaaacgattggctgaaagaaaaggttagtaaatttcttt |
9952309 |
T |
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| Q |
136 |
cattgattatattttaattttaataaaatatcgattata |
174 |
Q |
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| T |
9952308 |
cattgattatatttttattttaataaaatatcaattata |
9952270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 9873049 - 9872936
Alignment:
| Q |
53 |
cccaatacaagagcattaactttacaagcaaaagatgagacaggaaaatgactggctgaaagaaaaggttagtaaatttctttcattgattatattttaa |
152 |
Q |
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| T |
9873049 |
cccaatacaagagcatgaacttcacatgaaaacgatgagaaaggagaattctaggctgaaagaaaaggttagtaaacttctttcgctgatgataatttaa |
9872950 |
T |
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| Q |
153 |
ttttaataaaatat |
166 |
Q |
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||||||| |||||| |
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| T |
9872949 |
ttttaattaaatat |
9872936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 9885971 - 9885862
Alignment:
| Q |
50 |
tttcccaatacaagagcattaactttacaagcaaaagatgagacaggaaaatgactggctgaaagaaaaggttagtaaatttctttcattgattatattt |
149 |
Q |
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| T |
9885971 |
tttcccaatacaagagcatgaatttcacatacaaacgatgagaaaggggaatgttaggctgaaagaaaaggttactaagtttctttcgttgatgatattt |
9885872 |
T |
|
| Q |
150 |
taattttaat |
159 |
Q |
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|||||||||| |
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| T |
9885871 |
taattttaat |
9885862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 9872701 - 9872756
Alignment:
| Q |
111 |
aaagaaaaggttagtaaatttctttcattgattatattttaattttaataaaatat |
166 |
Q |
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||||||||||||| | || ||||||||||||||||||| |||||||||| |||||| |
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| T |
9872701 |
aaagaaaaggttaatgaacttctttcattgattatattgtaattttaatcaaatat |
9872756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 166
Target Start/End: Original strand, 9885633 - 9885672
Alignment:
| Q |
127 |
aatttctttcattgattatattttaattttaataaaatat |
166 |
Q |
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| T |
9885633 |
aatttctttcattgattatattttaattttaatcaaatat |
9885672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 9874121 - 9874074
Alignment:
| Q |
106 |
ggctgaaagaaaaggttagtaaatttctttcattgattatattttaat |
153 |
Q |
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| T |
9874121 |
ggctgaaagaaaaggttagtaaacttcttacgttgatgatattttaat |
9874074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 9308835 - 9308745
Alignment:
| Q |
35 |
ttgtgggggtcctcatttcccaatacaagagcattaactttacaagcaaaagatgagacaggaaaatgactggctgaaagaaaaggttagt |
125 |
Q |
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| T |
9308835 |
ttgtgggggtccttctttcccaatgcacgagcatgaacgtttcatgcaaaagatgagaatggagaatgaaatgctgaaagagaaggttagt |
9308745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36733019 - 36733051
Alignment:
| Q |
1 |
aagggtgtctatgtatcattactcgtctgaaaa |
33 |
Q |
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| T |
36733019 |
aagggtgtctatgtatcattactcttctgaaaa |
36733051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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