View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_high_30 (Length: 236)
Name: NF16654_high_30
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_high_30 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 164364 - 164583
Alignment:
| Q |
1 |
gtgagatgaatcgagagtttattctatctgattttcacctttgttttttacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttac |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164364 |
gtgaaatgaatcgagagtttattctatctgattttcacctttgttttttacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttac |
164463 |
T |
|
| Q |
101 |
ttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagttgggagaagaactccatacccaaccttatgaaaaaactaattggacgaaat |
200 |
Q |
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| T |
164464 |
ttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagttgagagaagaactccatacccaaccttatgaaaaaactaattggacgaaat |
164563 |
T |
|
| Q |
201 |
cacgccacctatgtgcaaag |
220 |
Q |
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|||| ||||||||||||||| |
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| T |
164564 |
cacgtcacctatgtgcaaag |
164583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 51 - 220
Target Start/End: Original strand, 103448 - 103617
Alignment:
| Q |
51 |
cagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagtt |
150 |
Q |
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||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
103448 |
cagctaaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagtt |
103547 |
T |
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| Q |
151 |
gggagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaag |
220 |
Q |
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| T |
103548 |
gagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaag |
103617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 92882 - 92684
Alignment:
| Q |
23 |
tctatctgattttcacctttgtttt-ttacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgta |
121 |
Q |
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||||||||||||||| || |||| || |||||||||||||||| |||||||| | |||||| | |||||||||||||||||||| ||||||||||| |
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| T |
92882 |
tctatctgattttcatctaagtttaatttcagctaaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtc |
92783 |
T |
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| Q |
122 |
ggtcctatcacaccactcatcttacagttgggagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaag |
220 |
Q |
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| T |
92782 |
ggtccaatcacaccactcgtcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaag |
92684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 220
Target Start/End: Complemental strand, 5670533 - 5670362
Alignment:
| Q |
49 |
tacagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacag |
148 |
Q |
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|||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||| |||||||||||||| ||||| || ||||||||||||||| || |
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| T |
5670533 |
tacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatgggaagaggtttgtcggtccaataacaccactcatcttaaag |
5670434 |
T |
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| Q |
149 |
ttgggagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaag |
220 |
Q |
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| T |
5670433 |
ttgagagaagaactccttacagaacattatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaag |
5670362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 220
Target Start/End: Complemental strand, 5722646 - 5722476
Alignment:
| Q |
50 |
acagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagt |
149 |
Q |
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||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||| | |||||| ||| |
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| T |
5722646 |
acagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagt |
5722547 |
T |
|
| Q |
150 |
tgggagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaag |
220 |
Q |
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| T |
5722546 |
tgagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgtcacctatgtgcaaag |
5722476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 220
Target Start/End: Complemental strand, 5692306 - 5692136
Alignment:
| Q |
50 |
acagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagt |
149 |
Q |
| |
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||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||| | | |||| ||| |
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| T |
5692306 |
acagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgaccttaaagt |
5692207 |
T |
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| Q |
150 |
tgggagaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaag |
220 |
Q |
| |
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|| |||||||||||| ||| |||||||||||||| ||||||| ||| |||||| |||||||||||| |
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| T |
5692206 |
tgagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaag |
5692136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 13052377 - 13052542
Alignment:
| Q |
55 |
taaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagttggga |
154 |
Q |
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||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || |
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| T |
13052377 |
taaaatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgaga |
13052476 |
T |
|
| Q |
155 |
gaagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgccacctatgtgcaaag |
220 |
Q |
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|||||| | |||| |||||||| |||||| | ||||| |||||||| |||| |||||||||| |
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| T |
13052477 |
gaagaaattcataatcaaccttacgaaaaagttgattggttcaaatcacgtcaccaatgtgcaaag |
13052542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 12137849 - 12137706
Alignment:
| Q |
51 |
cagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagtt |
150 |
Q |
| |
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||||||||||||||||||| ||||| || ||||||||||| |||||||||||||| || ||||| ||||| ||| | |||||||| |||||||||||||| |
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| T |
12137849 |
cagctaaaatgtggtgttactgtcgattggtatacatgcctatgtcttacttgtatggaaagagatttgtgggttcaatcacaccgctcatcttacagtt |
12137750 |
T |
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| Q |
151 |
gggagaagaactccatacccaaccttatgaaaaaactaattgga |
194 |
Q |
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| T |
12137749 |
gagagaagaactctatactgaaccttatgcaaaagttaattgga |
12137706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 1942043 - 1941994
Alignment:
| Q |
87 |
tgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacacca |
136 |
Q |
| |
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|||| |||| |||||||||||| ||||||||||| ||||| ||||||||| |
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| T |
1942043 |
tgccaatgtgttacttgtacggaaagaggtttgttggtccaatcacacca |
1941994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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