View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_high_7 (Length: 425)
Name: NF16654_high_7
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 43320924 - 43321260
Alignment:
| Q |
1 |
taaacctaaataaagaaagattgtgcaaaaatctttttaaaaaataaatcgttgaagaatccatctggtctagtttctagtttctagatgaaaagccaaa |
100 |
Q |
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| T |
43320924 |
taaacctaaataaagaaagattgtgcaaaaatcttcttaaaaaataaatcgttgaagaatccatctggtctagtttctagtttctagatgaaaagccaaa |
43321023 |
T |
|
| Q |
101 |
tgttattcacttgttagcacaaatatgatagacaagttgcatttgagagcacaatgcaaagcattgtttgtcccattaannnnnnnaatctctacgaaat |
200 |
Q |
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| T |
43321024 |
tgctattcacttgttagcacaaatatgatagacaagttgcatttgagagcataatgcaaagcattgtttgtcccattaatttttttaatctctacgaaat |
43321123 |
T |
|
| Q |
201 |
agactaagagttcttcaaagccttcaccacaagcaaggaatcacatttcaaccaaagacaacgtcaatctttatcaaagacaatttcaatgccataatta |
300 |
Q |
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| T |
43321124 |
agactaagagttcttcaaagccttcaccacaagcaaggaatcacatttcaaccaaagacaacgtcaatctttatcaaagacaatttcaatgccataatta |
43321223 |
T |
|
| Q |
301 |
cctagcttcaaacgcgatcgcattctccatgtagaag |
337 |
Q |
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| T |
43321224 |
cctagcttgaaacgcgatcgcattctccatgtagaag |
43321260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 346 - 406
Target Start/End: Original strand, 43321304 - 43321364
Alignment:
| Q |
346 |
caacaattgaatctataaaacccctaaaaatcccaaggtaaaaggaaaggaccgaccaagc |
406 |
Q |
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| T |
43321304 |
caacaattgaatctataaaacccctaaaaatcccacggtaagaggaaaggaccgagcaagc |
43321364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 198 - 298
Target Start/End: Original strand, 9380013 - 9380115
Alignment:
| Q |
198 |
aatagactaagag-ttcttcaaagccttcaccacaagcaaggaatcacatttcaaccaaagacaacgtcaatctttatcaaagacaatttcaat-gccat |
295 |
Q |
| |
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|||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||| | |||| |||||||||| ||||| |
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| T |
9380013 |
aatagactaagatcttcttaaaagctttcaccacaagcaaggaatcacatttcaaccaaagaccatgtcaaccttaaccaaaaccaatttcaatagccat |
9380112 |
T |
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| Q |
296 |
aat |
298 |
Q |
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||| |
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| T |
9380113 |
aat |
9380115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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