View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_high_8 (Length: 410)
Name: NF16654_high_8
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 21054793 - 21055168
Alignment:
| Q |
16 |
tattctcttgaaaaacctgggtggtgtaggaaattcaacatcagtgctcgagagcttgaacaagatgtcgaaaaaggtaaattgcatggccgacaaagaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21054793 |
tattctcttgaaaaacctgggtggtgtaggaaattcaacatcagtgctcgagagcttgaacaagatgtcgaaaaaggtaaattgcatggctgacaaagaa |
21054892 |
T |
|
| Q |
116 |
acttattgcattttactagaaatgctttgtcgcgagagaaagtatcttgaggcaagccaacttttggagcaaatgtcaattaaatcatattggccttgtg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21054893 |
acttattgcattttactagaaatgctttgtcgcgagagaaagtatcttgaggcaagccaacttttggagcaaatgtcaattaaatcatattggccttgtg |
21054992 |
T |
|
| Q |
216 |
ccaatacttacaattcgctcattgagggtctttgctccttaggtaggcaatatgaagctgttatgtggttggaggacatgataagccaaggaaagcttcc |
315 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21054993 |
ccaatacttacaatttgctcattgagggtctttgctccttaggtaggcaatatgaagctgttatgtggttggaggacatgataagccaaggaaagcttcc |
21055092 |
T |
|
| Q |
316 |
tgaaatttctgtatggaattcattagcatcttcattttgtaactcgggaatgatgaaagtgtctgctgagacattt |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| |
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| T |
21055093 |
tgaaatttctgtatggaattcattagcatcttcattttgtaactcagggatgatgaaagtgtctactgagacattt |
21055168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 394
Target Start/End: Complemental strand, 26367128 - 26366750
Alignment:
| Q |
16 |
tattctcttgaaaaacctgggtggtgtaggaaattcaacatcagtgctcgagagcttgaacaagatgtcgaaaaaggtaaattgcatggccgacaaagaa |
115 |
Q |
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|||||||||||||||| | || ||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26367128 |
tattctcttgaaaaacatacgtagtgtaggaaattcgacgtcggtgctcgaaagcttgaacaagatgtcgaaaaaggtaaattgcatggccgacaaagaa |
26367029 |
T |
|
| Q |
116 |
acttattgcattttactagaaatgctttgtcgcgagagaaagtatcttgaggcaagccaacttttggagcaaatgtcaattaaatcatattggccttgtg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
26367028 |
acttattgcattttactagaaatgctttgtcgcgagggaaagtatcttcaggcaagccaacttttggaacaaatgtcaattaaatcatattggccttctg |
26366929 |
T |
|
| Q |
216 |
ccaatacttacaattcgctcattgagggtctttgctccttaggtaggcaatatgaagctgttatgtggttggaggacatgataagccaaggaaagcttcc |
315 |
Q |
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| || | |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26366928 |
caaacagttacaatttgctcattgagggtctttgttccttaggtaggcaatatgaagctgttatgtggttagaggacatgataagccaaggaaagcttcc |
26366829 |
T |
|
| Q |
316 |
tgaaatttctgtatggaattcattagcatcttcattttgtaactcgggaatgatgaaagtgtctgctgagacatttaat |
394 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26366828 |
tgaaatttctgtttggaattcattagcatcttcattttgtaactcggggatgatgaaagtgtctgctgagacatttaat |
26366750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 270 - 394
Target Start/End: Complemental strand, 26364328 - 26364204
Alignment:
| Q |
270 |
aagctgttatgtggttggaggacatgataagccaaggaaagcttcctgaaatttctgtatggaattcattagcatcttcattttgtaactcgggaatgat |
369 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26364328 |
aagctcttatgtggttggaagacatgataagccaaggaaagcttcctgaaatttctgtatggaattcattagcatcttcattttgtaactcgggaatgat |
26364229 |
T |
|
| Q |
370 |
gaaagtgtctgctgagacatttaat |
394 |
Q |
| |
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||||||||| ||||||||||||||| |
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| T |
26364228 |
gaaagtgtcggctgagacatttaat |
26364204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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