View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_high_9 (Length: 402)
Name: NF16654_high_9
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 394
Target Start/End: Original strand, 13068573 - 13068955
Alignment:
| Q |
16 |
tacatatcaaacacccatttacacataattacacaagtgaac---aacaatcaatatggcaagtgcaaggagattgggcatagctatggatttctcacca |
112 |
Q |
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| T |
13068573 |
tacatatcaaacacccatttacacataattacacaagtgaacgacaacaatcaatatggcaagtgcaaggagattgggcatagctatggatttctcacca |
13068672 |
T |
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| Q |
113 |
tgcagcattaaggcttttcaatggacagtggataacattgtgaaagaaggtgataacctcattcttattatcattcgcccagaagagtatgagcatggag |
212 |
Q |
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| T |
13068673 |
tgcagcattaaggcttttcaatggacagtggataacattgtgaaagaaggtgataacctcattcttattatcattcgcccagaagagtatgagcatggag |
13068772 |
T |
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| Q |
213 |
aaatgcagctttgggaagttactggctcacgtaagtaattgcaatcttcttgcttttacaaattattacacaaaggagaaaagtattatcaattaaagtg |
312 |
Q |
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| T |
13068773 |
aaatgcagctttgggaagttactggctcacgtaagtaattgcaatcttcttgcttttacaaattattacacaaaggagaaaagtattatcaattaaagtg |
13068872 |
T |
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| Q |
313 |
gta-atattgtgattattttacaaattttcttggcaaattttgaatcatgctctttgaaattacaatgtcaaattattcatat |
394 |
Q |
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| T |
13068873 |
gtatatattgtgattattttacaatttttcttggcaaattttgaatcatgctctttgaaattacaatgtcaaattattcatat |
13068955 |
T |
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