View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_low_11 (Length: 379)
Name: NF16654_low_11
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 31428450 - 31428250
Alignment:
| Q |
16 |
atagcatggcttgtaggagaaggccttcagtaaccctcaaaggcttccatggaatcatagcatggcttacggtcagattaatcatatatttgactatagt |
115 |
Q |
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| T |
31428450 |
atagcatggcttataggagaaggccttcagtaaccctcaaaggcttccatggaatcatagcatggcttacggtcagattaatcatatatttgactatagt |
31428351 |
T |
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| Q |
116 |
gatgtgaaaatcatgggatcctgttggtgggttactgaaagctttgatccttaattatgtcttgcattcgtagttagtgagttaattcaacacatgattt |
215 |
Q |
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| T |
31428350 |
gatgtgaaaatcatgggatcctgttggtgggttactgaaagctttgatccttaattatgtcttgcattcgtagttagtgagttaattcaacacatgattt |
31428251 |
T |
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| Q |
216 |
t |
216 |
Q |
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| |
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| T |
31428250 |
t |
31428250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 213 - 366
Target Start/End: Complemental strand, 31428219 - 31428066
Alignment:
| Q |
213 |
ttttaatttcattatatttttgctcacnnnnnnncatgtgctgcttcttccagctcctattcaagcagttaattccattttcagttatactattatgtta |
312 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31428219 |
ttttaatttcattatatttttgctcactttttttcatgtgctgcttcttccagctcctcttcaagcagttaattccattttcagttatactattatgtta |
31428120 |
T |
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| Q |
313 |
ttgctagcttccactttctcagttcatcatcctctcaaatcccttgttcatttc |
366 |
Q |
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| T |
31428119 |
ttgctagcttccactttctcagttcatcatcctctcaaatcccttgttcttttc |
31428066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 31452473 - 31452309
Alignment:
| Q |
16 |
atagcatggcttgt--aggagaaggccttcagtaaccctcaaaggcttccatggaatcatagcatggcttacggtcagattaatcatatatttgactata |
113 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| |||||||||||| |||||| | |
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| T |
31452473 |
atagcatggcttgtgtaggagaaggccttcagtaaccctcaaaggcttccatggaatca---catg--ttatggttagattaatcataactttgac--ca |
31452381 |
T |
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| Q |
114 |
gtgatgtg--aaaatcatgggatcctgttggtgggttactgaaagctttgatccttaattatgtcttgcattc |
184 |
Q |
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| T |
31452380 |
gtgatgtgaaaaaatcgtgggatcc-gttgatgggttactgaaagctttgatccttaattatgtctagcattc |
31452309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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