View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_low_12 (Length: 373)
Name: NF16654_low_12
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 1160322 - 1160676
Alignment:
| Q |
1 |
tatagtaacagatagttcatgtttgtgtgcattttgactttcctcaaacccatctctgtggttcaaccttgtagatgcctcaatatttccatttccatct |
100 |
Q |
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| T |
1160322 |
tatagtaacagatagttcatgtttgtgtgcattttgactttccacaaacccatctttgtggttcaaccttgtagatgcctcaatatttccatttccatct |
1160421 |
T |
|
| Q |
101 |
aagttccctataatttgaataaaacaagttatcaaaccaaaagtgtgtgaaacaatattgaaatttgtgcttgtttgaaaaggtaaataaattgtaccat |
200 |
Q |
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| T |
1160422 |
aagttccctataatttgaataaaacaagttatcaaaccaaaagtgtgtgaaacaatattgaaatttgtgcttgtttgaaaaggtaaataaattgtaccat |
1160521 |
T |
|
| Q |
201 |
taaagccttgagcttgttcattgctttgcatgcttctagcttcatctttgtttgatatggcttgagcaaatgaattgataagtaggaacaagactagaaa |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1160522 |
taaagccttgagcttgttcattgctttgaatgcttctagcttcatctttgtttgatatggcttgagcacatgaattgataagtaggaacaagactagaaa |
1160621 |
T |
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| Q |
301 |
cattgaaatcttcatattcatttgatatggcttcatttgaactgtagtcattggt |
355 |
Q |
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| T |
1160622 |
cattgaaatcttcatattcatttgatatggcttcatttgaactgtagtcattggt |
1160676 |
T |
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