View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_low_13 (Length: 351)
Name: NF16654_low_13
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 11686166 - 11685852
Alignment:
| Q |
20 |
agcaatgaatttatgtttccaaatgtggttgtaatatcaatttgattaatcgagttgatcttatccagctttgtcctatttgtctgactgatacaaaaga |
119 |
Q |
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| T |
11686166 |
agcaatgaatttatgtttccaaatgtggttgtaatgtcaatttgattaatcgagttgatcttatccagctttgtcctatttgtctgactaatacaaaaga |
11686067 |
T |
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| Q |
120 |
catggcctttggatgtggacatcaggtaaatgcaannnnnnnnnnnnnnnnaaattgttcaaaatacatcaaatatatgaggtatgttatttgata-nnn |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11686066 |
catggcctttggatgtggacatcaggtaaatgcaattttttttttctttttaaattgctcaaaatacatcaaatatatgaggtatgttatttgatatttt |
11685967 |
T |
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| Q |
219 |
nnnnnnnnnnnnnnnnngaagacttgctgtgaatgtggaaaagagcttaagtcatgccccatctgcagaagctgcattaacactagaattaagctttact |
318 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11685966 |
ttgttttatgcttttttgaagacttgttgtgaatgtggaaaagagcttaagtcatgccccatctgcagaagctgcattaacactagaattaagctttact |
11685867 |
T |
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| Q |
319 |
aaggttattgttgtt |
333 |
Q |
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||||||||||||||| |
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| T |
11685866 |
aaggttattgttgtt |
11685852 |
T |
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