View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_low_14 (Length: 341)
Name: NF16654_low_14
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 14485106 - 14484790
Alignment:
| Q |
18 |
atgaacattgtaagtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagacagcnnnnnnnggttgaatctgaagt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
14485106 |
atgaacattgtaagtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagacggcaaaaaa-ggttgaatctgaagt |
14485008 |
T |
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| Q |
118 |
gttggtggaaaaatagtgagaaaatggtaatgggtttttgggggatggtgagaaagttaaggtcttgagatagagaagggttgtacggcgatgagtagta |
217 |
Q |
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| T |
14485007 |
gttggtggaaaaatagtgagaaaatggtaatgggtttttgggggatggtgagaaagttaaggtcttgagatagagaagggttgtacggcgatgagtagta |
14484908 |
T |
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| Q |
218 |
aacatttgaaaagc-----------aattacaaaatga--ttaagaaattgaaaaaggcggaaaggagagtgaaattcaatttattaccttgttgtttgt |
304 |
Q |
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| T |
14484907 |
aacatttgaaaagcaattgaagatgaattacaaaatgattttaagaaattgaaaaaggcgtaaaggagagtgaaattcaatttattaccttgttgtttgt |
14484808 |
T |
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| Q |
305 |
tggtgtgtaggtgaaatt |
322 |
Q |
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| T |
14484807 |
tgctgtgtaggtgaaatt |
14484790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 14476328 - 14476457
Alignment:
| Q |
21 |
aacattgtaagtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagacagcnnnnnnnggttgaatctgaagtgtt |
120 |
Q |
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| T |
14476328 |
aacattgtaagtggaggaaagtttggaagcagattgtgggtcaaagccaaaattgttgatgaggtaggagacagc-aaaagaggttgaatctgaagtgtt |
14476426 |
T |
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| Q |
121 |
ggtggaaaaatagtgagaaaatggtaatggg |
151 |
Q |
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| T |
14476427 |
ggtgcaaaaatggagaggaaagggtaatggg |
14476457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 14502040 - 14501878
Alignment:
| Q |
25 |
ttgtaagtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagacagcnnnnnnnggttgaatctgaagtgttggtg |
124 |
Q |
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| T |
14502040 |
ttgtaggtggagcagagtttggaagcaaattgtgggtcaaagccaaaattgttgatgaggtatgagacag-aaaatgaggttgaatctgaagtgttggtg |
14501942 |
T |
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| Q |
125 |
gaaaaatagtgagaaaatggtaatgggtttttgggggatggtgagaaagttaaggtcttgagat |
188 |
Q |
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| T |
14501941 |
cagaaatgaagagaaaatggtaatggggttattgggtttggtgagaaagttaagggtttgagat |
14501878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 14481514 - 14481581
Alignment:
| Q |
25 |
ttgtaagtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagac |
92 |
Q |
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| T |
14481514 |
ttgtaagtggaacaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtatgagac |
14481581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 14152738 - 14152655
Alignment:
| Q |
40 |
agtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagacagcnnnnnnnggttgaatctgaagtgttggtg |
124 |
Q |
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| T |
14152738 |
agtttggaagcagattgtgggtcaaaaccaaaattgttgatgaggtaggagactgc-aagagaggttgaatctgaagtgttggtg |
14152655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 14165509 - 14165559
Alignment:
| Q |
40 |
agtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagag |
90 |
Q |
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| T |
14165509 |
agtttggaagcaaattgtggggtaaacccaaaattgtgaatgaggtaagag |
14165559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 14494553 - 14494427
Alignment:
| Q |
25 |
ttgtaagtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagacagcnnnnnnnggttgaatctgaagtgttggtg |
124 |
Q |
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|||||||||||| | |||||||||||| |||||||| ||| ||||| |||| |||||||| |||||||| ||||||||| |||| ||||||| |
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| T |
14494553 |
ttgtaagtggagcagagtttggaagcagattgtgggtcaaacccaaacttgtgaatgaggtatgagacagc-aaaagaggttgaatcagaagcgttggtg |
14494455 |
T |
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| Q |
125 |
gaaaaatagtgagaaaatggtaatgggt |
152 |
Q |
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| |||| | |||||||||| ||||||| |
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| T |
14494454 |
cataaatggagagaaaatggaaatgggt |
14494427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 14162429 - 14162492
Alignment:
| Q |
20 |
gaacattgtaagtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgag |
83 |
Q |
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|||||||||||| |||| | ||||| |||||||||||||||| ||||||||||| | |||||| |
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| T |
14162429 |
gaacattgtaagaggagaagagtttagaagcaaattgtggggtgaagccaaaattatggatgag |
14162492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 14144766 - 14144710
Alignment:
| Q |
30 |
agtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggta |
86 |
Q |
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||||||| | ||||||||||||||||||||| ||| |||||||||| |||||||| |
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| T |
14144766 |
agtggagcatagtttggaagcaaattgtgggtcaaacccaaaattgtgaatgaggta |
14144710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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