View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_low_17 (Length: 318)
Name: NF16654_low_17
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 313
Target Start/End: Original strand, 32059466 - 32059772
Alignment:
| Q |
6 |
aaagaatggatattattcggtaagaagtgcatatcgtttgtgtgtaaaagaaattgtggataactctcacttaagaaggcatgggtattggg-gtgggat |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| || |
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| T |
32059466 |
aaagaatggatattattcggtaagaagtgcatatcgtttgtgagtaaaagaaattgtggataactctcacttaagaaggcatgggtatttggagtgtaat |
32059565 |
T |
|
| Q |
105 |
ttggaggttgaaagttcccccaaaagttaagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcgtgtaagattgaactgtggaggggttaat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32059566 |
ttggaggttgaaagttcccccaaaagttaagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcgtgtaagattgaactgtagaggggttaat |
32059665 |
T |
|
| Q |
205 |
tgtccgtcgacgtgtattatgtgtaatgacccccatgaggacagttatcannnnnnnncccgctgctgtacagcagtaggtgtttggcgcacagcaggtc |
304 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||| ||||| |
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| T |
32059666 |
tgtccgtcgacgtgta-tatgtgtaatgacccccatgaggacagttatc-gtattttttccactgctgtacagaagtaggtgtatggcgcacagaaggtc |
32059763 |
T |
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| Q |
305 |
tgtgatcct |
313 |
Q |
| |
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|||| |||| |
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| T |
32059764 |
tgtggtcct |
32059772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 302
Target Start/End: Original strand, 39532749 - 39533045
Alignment:
| Q |
6 |
aaagaatggatattattcggtaagaagtgcatatcgtttgtgtgtaaaagaaattgtggataactctcacttaagaaggcatgggtattggggtgggatt |
105 |
Q |
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|||||||||| |||||||||||| | |||| ||||| ||||| || | ||||||||||||||||| || ||| | | |||| | ||||| ||| || |
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| T |
39532749 |
aaagaatggacattattcggtaaaacgtgcgtatcgcttgtgcgtggaggaaattgtggataactcgcatttacggaaaaatggattttgggttggaatc |
39532848 |
T |
|
| Q |
106 |
tggaggttgaaagttcccccaaaagttaagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcgtgtaagattgaactgtggaggggttaatt |
205 |
Q |
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|||| || |||||||| |||||||| |||| ||||||||||| || ||||| |||||||||||||||| || ||| |||| | ||||||||| || |
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| T |
39532849 |
tggaaattaaaagttcctccaaaagtcaagagcatggtgtggcgtgtttgtagagaatgtttgcctactcgcgtcagactgaatcggagaggggttactt |
39532948 |
T |
|
| Q |
206 |
gtccgtcgacgtgtattatgtgtaatgacccccatgaggacagttatcannnnnnnncccgctgctgtacagcagtaggtgtttggcgcacagcagg |
302 |
Q |
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||||||| ||||| | |||| ||||| || ||||||||||||||||| || ||||||||||||||||||||| ||||| |||||||| |
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| T |
39532949 |
gtccgtctacgtgcgtgttgtgcaatgatccgcatgaggacagttatcacatttttttccactgctgtacagcagtaggtgtgtggcgtacagcagg |
39533045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 41469685 - 41469768
Alignment:
| Q |
93 |
ttggggtgggatttggaggttgaaagttcccccaaaagttaagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcg |
176 |
Q |
| |
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||||||||| ||||||| || |||||||| || || |||||||||||| |||||||||||||||| ||||||| |||||||| |
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| T |
41469685 |
ttggggtggaatttggaaattaaaagttccacctaaggttaagaatatgttgtggcgagtgtgtagagaatgtttacctactcg |
41469768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 3237771 - 3237856
Alignment:
| Q |
127 |
aaagttaagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcgtgtaagattgaactgtggaggggttaattgtccgtc |
212 |
Q |
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|||||||||| |||||| ||| ||||||||||| ||||||| ||||| ||||||||| | ||| || |||| |||| |||||||| |
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| T |
3237771 |
aaagttaagagtatggtttggagagtgtgtagggaatgtttacctacgcgtgtaagactaaaccgtagaggtgttatgtgtccgtc |
3237856 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 33098221 - 33098398
Alignment:
| Q |
6 |
aaagaatggatattattcggtaagaagtgcatatcgtttgtgtgtaaaagaaattgtggataactctca-cttaagaaggcatgggtattggggtgggat |
104 |
Q |
| |
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|||||| ||| | ||||||||||||||||| || |||||||| | |||| || |||||||| ||||| |||| |||| |||| ||||| |||| || |
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| T |
33098221 |
aaagaacggacaatattcggtaagaagtgcgtactgtttgtgtattgaagacatagtggataattctcatcttaggaaga-atggtcattggagtggcat |
33098319 |
T |
|
| Q |
105 |
ttggaggttgaaagttcccccaaaagttaagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcgtgtaaga |
183 |
Q |
| |
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||||| |||||||| || || |||||||||| ||||| ||| ||||||||||| ||||||| ||||| |||| |||| |
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| T |
33098320 |
gtggagattgaaagtgcctccgaaagttaagagcatggtttggagagtgtgtagggaatgtttacctacacgtgcaaga |
33098398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 29206514 - 29206683
Alignment:
| Q |
7 |
aagaatggatattattcggtaagaagtgcatatcgtttgtgtgtaaaagaaattgtggataactctcacttaagaaggcatgggtattggggtgggattt |
106 |
Q |
| |
|
|||||||| ||||||||||| |||||| |||||| | ||||| ||||| |||||| |||| | ||| | |||||| ||| |||||| |||| |||| |
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| T |
29206514 |
aagaatgggcattattcggtaccaagtgcgtatcgtctttgtgtcaaagatattgtgaataatacacacctgagaaggagtggttattggagtggaattt |
29206613 |
T |
|
| Q |
107 |
ggaggttgaaagttcccccaaaagttaagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcg |
176 |
Q |
| |
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||| ||||||||| || || || || |||||| |||||||| ||| ||||| ||||||| |||||||| |
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| T |
29206614 |
ggaagttgaaagtgcctcccaaggtcaagaattcggtgtggcaagtttgtagagaatgttttcctactcg |
29206683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 34072283 - 34072223
Alignment:
| Q |
87 |
tgggtattggggtgggatttggaggttgaaagttcccccaaaagttaagaatatggtgtgg |
147 |
Q |
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|||||||||| |||| || ||||| |||||||||||||| ||||| |||||| |||||||| |
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| T |
34072283 |
tgggtattggagtggcatctggagattgaaagttccccccaaagtcaagaatttggtgtgg |
34072223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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