View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_low_19 (Length: 315)
Name: NF16654_low_19
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 147 - 284
Target Start/End: Original strand, 45100040 - 45100177
Alignment:
| Q |
147 |
ctataacggtgatattatttgagggacaacccatcaacatatcaaagaagaggagcagcgaccaaagtgagaaataagaaactcaacccgtatgaatgag |
246 |
Q |
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| T |
45100040 |
ctataacggtgatattatttgagggacaacccatcaacatatcaaagaagaggagtagcgaccaaagtgagaaataagaaactcaacccgtatgaaagag |
45100139 |
T |
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| Q |
247 |
agaaggggtgcgttaaggataaggaaaaccaccaacca |
284 |
Q |
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| T |
45100140 |
agagggggtgcattaaggaaaagggaaacgaccaacca |
45100177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 45099932 - 45099999
Alignment:
| Q |
62 |
gttttcaatgtttttgttcaaattttgtatagataattcatagatgaaattatgtgttaatttttctt |
129 |
Q |
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| T |
45099932 |
gttttcaatgtttttgttcaaattttatgtagataattcatagatgaaattgcgtgttaatttttctt |
45099999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 147 - 284
Target Start/End: Original strand, 12228421 - 12228558
Alignment:
| Q |
147 |
ctataacggtgatattatttgagggacaacccatcaacatatcaaagaagaggagcagcgaccaaagtgagaaataagaaactcaacccgtatgaatgag |
246 |
Q |
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| T |
12228421 |
ctataacggtgatattatttgagggacaacccatcaacatatcaaagaagaggagtagcgaccaaagtgagaaataagaaactcaacccgtatgaaagag |
12228520 |
T |
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| Q |
247 |
agaaggggtgcgttaaggataaggaaaaccaccaacca |
284 |
Q |
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| T |
12228521 |
agagagggtgtgttaaggaaaagggaaacgaccaacca |
12228558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 129 - 287
Target Start/End: Complemental strand, 35167472 - 35167314
Alignment:
| Q |
129 |
taaattggaggcctatgactataacggtgatattatttgagggacaacccatcaacatatcaaagaagaggagcagcgaccaaagtgagaaataagaaac |
228 |
Q |
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| T |
35167472 |
taaactggaggcctatgcctgtaacggtgatattatgtgagggataacccatcaacatatcaaagaagaggaatagcgaccaaagtgagaaataagaaac |
35167373 |
T |
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| Q |
229 |
tcaacccgtatgaatgagagaaggggtgcgttaaggataaggaaaaccaccaaccatat |
287 |
Q |
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| T |
35167372 |
tcaacccgtatgaaaggtagagagggtgcattaaggaaaagggaaacaatcaaccatat |
35167314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 35167569 - 35167502
Alignment:
| Q |
62 |
gttttcaatgtttttgttcaaattttgtatagataattcatagatgaaattatgtgttaatttttctt |
129 |
Q |
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| T |
35167569 |
gttttcaatgttttcgttcaaattttgtgtagataattcatagatgaaattatgtgttaatttttctt |
35167502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 12228314 - 12228377
Alignment:
| Q |
62 |
gttttcaatgtttttgttcaaattttgtatagataattcatagatgaaattatgtgttaatttt |
125 |
Q |
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| T |
12228314 |
gttttcaatgtttttgttcaaattttatgtagataattcatagatgaaattacgtgttaatttt |
12228377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 17898583 - 17898536
Alignment:
| Q |
84 |
ttttgtatagataattcatagatgaaat--tatgtgttaatttttctt |
129 |
Q |
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| T |
17898583 |
ttttgtgtagataattcatagatgaaattatatgtgttaatttttctt |
17898536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 17898513 - 17898409
Alignment:
| Q |
129 |
taaattggaggcctatgactataacggtgatattatttgagggacaacccatc----aacatatcaaagaagaggagcagcgaccaaagtgagaaataag |
224 |
Q |
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|||||||||| ||||| |||||| | |||||| || |||||||||||||||| | ||||||||| | ||||| |||||||||||| |||||||| |
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| T |
17898513 |
taaattggagagctatgcctataatgatgatataatgtgagggacaacccatcatctagcatatcaaacacaaggagtagcgaccaaagtaagaaataat |
17898414 |
T |
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| Q |
225 |
aaact |
229 |
Q |
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||||| |
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| T |
17898413 |
aaact |
17898409 |
T |
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