View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16654_low_2 (Length: 726)

Name: NF16654_low_2
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16654_low_2
NF16654_low_2
[»] chr8 (11 HSPs)
chr8 (336-706)||(11810558-11810930)
chr8 (16-338)||(11810173-11810497)
chr8 (16-189)||(11802315-11802488)
chr8 (589-706)||(11802933-11803050)
chr8 (349-426)||(43456669-43456746)
chr8 (350-426)||(38289252-38289328)
chr8 (346-388)||(40444703-40444745)
chr8 (349-431)||(43508460-43508542)
chr8 (458-507)||(11810682-11810731)
chr8 (350-403)||(19733109-19733162)
chr8 (374-423)||(42801641-42801690)
[»] chr3 (4 HSPs)
chr3 (344-431)||(166784-166871)
chr3 (348-426)||(32421348-32421426)
chr3 (348-426)||(50381714-50381792)
chr3 (354-431)||(37756425-37756502)
[»] chr4 (6 HSPs)
chr4 (348-426)||(38690666-38690744)
chr4 (348-426)||(48404154-48404232)
chr4 (345-426)||(9759368-9759449)
chr4 (341-424)||(33993638-33993721)
chr4 (343-426)||(43362185-43362268)
chr4 (348-428)||(35909043-35909124)
[»] chr1 (12 HSPs)
chr1 (341-426)||(12148590-12148675)
chr1 (344-403)||(17916703-17916762)
chr1 (352-431)||(19424050-19424129)
chr1 (348-415)||(24253671-24253738)
chr1 (382-423)||(44493434-44493475)
chr1 (347-431)||(1862852-1862935)
chr1 (349-403)||(4684217-4684271)
chr1 (340-426)||(7438613-7438699)
chr1 (348-426)||(15417834-15417912)
chr1 (348-426)||(49619972-49620050)
chr1 (341-426)||(14262738-14262823)
chr1 (346-431)||(22779221-22779306)
[»] chr7 (16 HSPs)
chr7 (344-423)||(3392467-3392545)
chr7 (348-403)||(8249705-8249760)
chr7 (343-428)||(24315368-24315453)
chr7 (348-388)||(8133850-8133890)
chr7 (345-388)||(29357798-29357841)
chr7 (346-417)||(39926530-39926600)
chr7 (344-403)||(46570011-46570070)
chr7 (346-388)||(17883887-17883928)
chr7 (348-426)||(24029985-24030063)
chr7 (348-426)||(31793468-31793546)
chr7 (344-422)||(46195914-46195992)
chr7 (348-426)||(48433727-48433805)
chr7 (348-381)||(14707122-14707155)
chr7 (341-426)||(27454004-27454089)
chr7 (345-406)||(34000260-34000320)
chr7 (370-423)||(47194416-47194469)
[»] chr6 (4 HSPs)
chr6 (345-388)||(1194757-1194800)
chr6 (344-403)||(20672941-20673000)
chr6 (344-423)||(31705899-31705977)
chr6 (348-426)||(17216958-17217036)
[»] chr5 (2 HSPs)
chr5 (343-403)||(12256527-12256587)
chr5 (348-403)||(31991801-31991856)
[»] chr2 (3 HSPs)
chr2 (343-390)||(9564533-9564580)
chr2 (344-422)||(24202146-24202224)
chr2 (345-402)||(36755619-36755676)


Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 336 - 706
Target Start/End: Original strand, 11810558 - 11810930
Alignment:
Q  336 gatactgtcccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatttacctgtag 435  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||    
T  11810558 gatactgtcccgtgagcttagctcacttggtaatggataatgcataatatatatagcggtcggggttcaaaactcagacatcccacttatttacctgtag 11810657  T
Q  436 ttacta--aactacttgacgcgtatgttagaattagttgaatttcatttatacaaaattcaactaattctaacaacgacgccggtgtataactaactctt 533  Q
    ||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11810658 ttactataaactacttgacgcgtatgttagaattagttgaatttcgtttatacaaaattcaactaattctaacaacgacgccggtgtataactaactctt 11810757  T
Q  534 aactaccatacatatatatggggacatagaatgatgcatgtggttttggcatggcacaggtacaagatatacatagaaggatgggcttggtcagttagtg 633  Q
    ||||||||| |||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11810758 aactaccatgcatatatatggggaaacagaatgatacatgtggttttggcatggcacaggtacaagatatacatagaaggatgggcttggtcagttagtg 11810857  T
Q  634 aaaaatacattatggcatgtgattccatgacattatatgtaaagtccaattaccatgattttttcatcagagg 706  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11810858 aaaaatacatcatggcatgtgattccatgacattatatgtaaagtctaattaccatgattttttcatcagagg 11810930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 11810173 - 11810497
Alignment:
Q  16 aatatccttaaagacataaaagaagggaacaaaaagaccaagtggaaggatagagtaccttatgcttattggaaggggaacccttatgttgctccaacta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11810173 aatatccttaaagacataaaagaagggaacaaaaagaccaagtggaaggatagagtaccttatgcttattggaaggggaacccttatgttgctccaacta 11810272  T
Q  116 ggcaagaccttctacaatgcaatgttacatttgaaaatgattggaacactctcatatacctacagg---tattttttccattaatcatggatacatttgt 212  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||   | |||||| |||||||||||||| ||||||     
T  11810273 ggcaaaaccttctacaatgcaatgttacattagaaaatgattggaacactctcatatacatacaggttttttttttttcattaatcatggatgcatttgg 11810372  T
Q  213 cctaaaattaacatcaaagaaatattaatgtattgtgtatatttgatcacaggactggatacaagaatccaatcaaggtttcaacaaatccaacttaggg 312  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  11810373 cctaaaattaacatcaaagaaata-taatgtattgtgtatatttgatcacaggactggatacaagaatccaatcaaggtttcaacaagtcaaacttaggg 11810471  T
Q  313 gaccaatgtactcataggtaggggat 338  Q
    ||||||||||||||||||||||||||    
T  11810472 gaccaatgtactcataggtaggggat 11810497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 11802315 - 11802488
Alignment:
Q  16 aatatccttaaagacataaaagaagggaacaaaaagaccaagtggaaggatagagtaccttatgcttattggaaggggaacccttatgttgctccaacta 115  Q
    |||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  11802315 aatatcctaaaagaaataaaagaagggaacaaagagaccaagtggaaggatagagtaccttatgcttattggaaggggaaccctaatgttgctgcaacta 11802414  T
Q  116 ggcaagaccttctacaatgcaatgttacatttgaaaatgattggaacactctcatatacctacaggtatttttt 189  Q
    || || ||||| |   |||||||| |||||   || ||||||||||||||| | ||||| ||||||||||||||    
T  11802415 ggaaaaaccttttgagatgcaatgctacatcaaaagatgattggaacactcgcctatacatacaggtatttttt 11802488  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 589 - 706
Target Start/End: Original strand, 11802933 - 11803050
Alignment:
Q  589 acaggtacaagatatacatagaaggatgggcttggtcagttagtgaaaaatacattatggcatgtgattccatgacattatatgtaaagtccaattacca 688  Q
    ||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |   |||||| | |    
T  11802933 acaggtataagatttatatagaaggatgggcttggtcagttagtgagaaatacattatggcatgtgattccatgacattatatgttagacccaatttcta 11803032  T
Q  689 tgattttttcatcagagg 706  Q
    ||| |||||||| |||||    
T  11803033 tgactttttcattagagg 11803050  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 43456746 - 43456669
Alignment:
Q  349 gagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    |||||||||||| ||| ||| |||||||| | ||||||||||  ||||||||||| || | | |||||||||||||||    
T  43456746 gagcttagctcatttggtaagggataatgcacaatatatgtaagggtcggggttcgaaccccggacaccccacttatt 43456669  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 426
Target Start/End: Complemental strand, 38289328 - 38289252
Alignment:
Q  350 agcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    ||||||||||| ||| ||| |||||||| | ||||| || || ||||||||||| || |||| ||||||||||||||    
T  38289328 agcttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcgaacctcaaacaccccacttatt 38289252  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 40444703 - 40444745
Alignment:
Q  346 cgtgagcttagctcacttgataatggataatgtataatatatg 388  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||    
T  40444703 cgtgagcttagctcacttggtaagggataatgcataatatatg 40444745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 349 - 431
Target Start/End: Complemental strand, 43508542 - 43508460
Alignment:
Q  349 gagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatttacct 431  Q
    |||| ||||||| ||||||| ||| |||| ||||||||||||| || |||||||  || | | ||||||||||||||| ||||    
T  43508542 gagcatagctcagttgataagggacaatgcataatatatgtaggggccggggtttgaaccccggacaccccacttattcacct 43508460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 507
Target Start/End: Complemental strand, 11810731 - 11810682
Alignment:
Q  458 tgttagaattagttgaatttcatttatacaaaattcaactaattctaaca 507  Q
    ||||||||||||||||||||  | || || ||||||||||||||||||||    
T  11810731 tgttagaattagttgaattttgtataaacgaaattcaactaattctaaca 11810682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 19733162 - 19733109
Alignment:
Q  350 agcttagctcacttgataatggataatgtataatatatgtagtggtcggggttc 403  Q
    ||||||||||| ||| ||| |||||||| |||||||||| || |||||||||||    
T  19733162 agcttagctcatttggtaagggataatgcataatatatgcaggggtcggggttc 19733109  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 42801690 - 42801641
Alignment:
Q  374 aatgtataatatatgtagtggtcggggttcaaaactcagacaccccactt 423  Q
    |||||||| ||||||||| ||||||||||| || ||| ||||||||||||    
T  42801690 aatgtatattatatgtaggggtcggggttcgaacctcggacaccccactt 42801641  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 344 - 431
Target Start/End: Original strand, 166784 - 166871
Alignment:
Q  344 cccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatttacct 431  Q
    ||||||||||||||||||||| ||| |||||||| ||||| |||| || || |||||||| || | |||||||| |||||||| ||||    
T  166784 cccgtgagcttagctcacttggtaagggataatgcataatttatgcaggggccggggttcgaaccccagacacctcacttattcacct 166871  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 348 - 426
Target Start/End: Original strand, 32421348 - 32421426
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    |||||||||||||  || ||| |||||||| |||||||||| || ||||||||||| || |||  || |||||||||||    
T  32421348 tgagcttagctcatctggtaagggataatgcataatatatgcaggggtcggggttcgaacctcgaactccccacttatt 32421426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 348 - 426
Target Start/End: Original strand, 50381714 - 50381792
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    |||||||| |||| ||| ||| |||||||| | |||||||| || ||||||||||| || | | |||||||||||||||    
T  50381714 tgagcttaactcatttggtaagggataatgcacaatatatgcaggggtcggggttcgaatcccggacaccccacttatt 50381792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 431
Target Start/End: Complemental strand, 37756502 - 37756425
Alignment:
Q  354 tagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatttacct 431  Q
    ||||||||||||||| |||||||| ||||| |||| || ||  ||||||| || | || |||||||||||||| ||||    
T  37756502 tagctcacttgataagggataatgcataatttatgcaggggctggggttcgaaccccaaacaccccacttattcacct 37756425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 348 - 426
Target Start/End: Original strand, 38690666 - 38690744
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    ||||||||||||||||| ||| |||||||| ||| |||||| || ||||||||||| || | | |||||||||||||||    
T  38690666 tgagcttagctcacttggtaagggataatgcatattatatgcaggggtcggggttcgaaccccggacaccccacttatt 38690744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 348 - 426
Target Start/End: Complemental strand, 48404232 - 48404154
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    ||||||||||||| |||||||  ||||||||||||||| |||||  |||||||||| || | | |||||| ||||||||    
T  48404232 tgagcttagctcatttgataagagataatgtataatatgtgtaggtgtcggggttcgaaccccggacacctcacttatt 48404154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 426
Target Start/End: Original strand, 9759368 - 9759449
Alignment:
Q  345 ccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    |||||||||||||||||||| |||  |||||| | |||||||| ||   |||||||||| || | |||||||||||||||||    
T  9759368 ccgtgagcttagctcacttggtaaaagataatatttaatatatatacgagtcggggttcgaatcccagacaccccacttatt 9759449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 33993721 - 33993638
Alignment:
Q  341 tgtcccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccactta 424  Q
    |||||||| ||||||||||||||||||| |||||||  |||| ||||| || ||||||| ||| || | | |||||| ||||||    
T  33993721 tgtcccgtaagcttagctcacttgataagggataatacataacatatgcaggggtcgggattcgaatcccggacacctcactta 33993638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 426
Target Start/End: Complemental strand, 43362268 - 43362185
Alignment:
Q  343 tcccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    |||| ||||||||||||| ||| ||| |||||||| | |||||||  || ||||||||||| || | | |||||||||||||||    
T  43362268 tcccatgagcttagctcatttgctaagggataatgcacaatatattcaggggtcggggttcgaaccccggacaccccacttatt 43362185  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 428
Target Start/End: Complemental strand, 35909124 - 35909043
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtataatatatgtagtggtcgg-ggttcaaaactcagacaccccacttattta 428  Q
    ||||||||||||| ||  ||| |||||||| | |||||||| || |||||| ||||| || | |||||||||||||||||||    
T  35909124 tgagcttagctcattttgtaagggataatgcacaatatatgcaggggtcggaggttcgaatcccagacaccccacttattta 35909043  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 12148675 - 12148590
Alignment:
Q  341 tgtcccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    |||||| ||||||||||||| || ||||  ||||||||| ||||| || || |||||| ||||||| | |||||||||||||||||    
T  12148675 tgtcccatgagcttagctcattttataagcgataatgtacaatatgtgcaggggtcggagttcaaaccccagacaccccacttatt 12148590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 403
Target Start/End: Original strand, 17916703 - 17916762
Alignment:
Q  344 cccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttc 403  Q
    ||||||||||||||||| ||| ||| ||||||||||| ||||||| || |||||||||||    
T  17916703 cccgtgagcttagctcatttggtaaaggataatgtattatatatgcaggggtcggggttc 17916762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 352 - 431
Target Start/End: Original strand, 19424050 - 19424129
Alignment:
Q  352 cttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatttacct 431  Q
    ||||||||| ||||||| |||||||| ||| |||||| || ||||||||||| || | | ||||||||||||||| ||||    
T  19424050 cttagctcatttgataagggataatgcatattatatgcaggggtcggggttcgaaccccggacaccccacttattcacct 19424129  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 348 - 415
Target Start/End: Complemental strand, 24253738 - 24253671
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagaca 415  Q
    ||||||||||||||||||||| |||||||| ||||| |||| || ||||||| ||| || ||||||||    
T  24253738 tgagcttagctcacttgataagggataatgcataatttatgcaggggtcgggattcgaacctcagaca 24253671  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 423
Target Start/End: Original strand, 44493434 - 44493475
Alignment:
Q  382 atatatgtagtggtcggggttcaaaactcagacaccccactt 423  Q
    ||||||||||||||||| ||||||| ||||||||||||||||    
T  44493434 atatatgtagtggtcggagttcaaacctcagacaccccactt 44493475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 347 - 431
Target Start/End: Complemental strand, 1862935 - 1862852
Alignment:
Q  347 gtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatttacct 431  Q
    |||||||||||||||||||||| |||||||| ||| |||||| || |||   |||| ||| ||||||||| |||| |||||||||    
T  1862935 gtgagcttagctcacttgataagggataatgcatattatatgaag-ggttaaggtttaaacctcagacactccacatatttacct 1862852  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 349 - 403
Target Start/End: Complemental strand, 4684271 - 4684217
Alignment:
Q  349 gagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttc 403  Q
    ||||||| |||| ||| ||| |||||||||| ||||||||||| |||||||||||    
T  4684271 gagcttacctcatttggtaagggataatgtacaatatatgtaggggtcggggttc 4684217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 7438613 - 7438699
Alignment:
Q  340 ctgtcccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    ||||||| ||||||||||||| ||| ||| |||||||| | ||| | ||||| ||||||||||| ||   | |||||||||||||||    
T  7438613 ctgtcccatgagcttagctcatttggtaagggataatgcacaatttgtgtaggggtcggggttcgaactccggacaccccacttatt 7438699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 348 - 426
Target Start/End: Complemental strand, 15417912 - 15417834
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    ||||||||||||| ||| ||| |||||||| | ||||| ||||| ||  ||||||| || ||| |||||||||||||||    
T  15417912 tgagcttagctcatttggtaaaggataatgcacaatatgtgtaggggctggggttcgaagctcggacaccccacttatt 15417834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 348 - 426
Target Start/End: Original strand, 49619972 - 49620050
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    ||||||||||||| ||| ||| |||||||| | ||||| || || |||||||||||| | | | |||||||||||||||    
T  49619972 tgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcagaccccggacaccccacttatt 49620050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 14262823 - 14262738
Alignment:
Q  341 tgtcccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    |||||| |||| ||| |||| ||||||| |||||||| | |||||||| || ||||||||||| || | | ||||||| |||||||    
T  14262823 tgtcccatgagattaactcatttgataagggataatgcacaatatatgcaggggtcggggttcgaaccccggacaccctacttatt 14262738  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 431
Target Start/End: Original strand, 22779221 - 22779306
Alignment:
Q  346 cgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatttacct 431  Q
    ||||||||||||||||||| ||| |||||||| ||| | |||  ||  |||||||||| || | || |||||||||||||| ||||    
T  22779221 cgtgagcttagctcacttggtaagggataatgcatattttatacaggagtcggggttcgaaccccaaacaccccacttattcacct 22779306  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 423
Target Start/End: Original strand, 3392467 - 3392545
Alignment:
Q  344 cccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccactt 423  Q
    |||||||||||| |||| |||||| |||||| || ||| ||||||||| ||||||||||| || | ||||||||||||||    
T  3392467 cccgtgagcttaactcagttgata-tggatattgcatattatatgtaggggtcggggttcgaaccccagacaccccactt 3392545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 8249705 - 8249760
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttc 403  Q
    ||||||||||||||||| ||| |||||||| |||||||||| || |||||||||||    
T  8249705 tgagcttagctcacttggtaaaggataatgcataatatatgcaggggtcggggttc 8249760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 428
Target Start/End: Complemental strand, 24315453 - 24315368
Alignment:
Q  343 tcccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttattta 428  Q
    |||||||||||||||||| ||  |||||||||||| | ||||| ||||| ||||||||||| || | || |||  |||||||||||    
T  24315453 tcccgtgagcttagctcatttagtaatggataatgcacaatatgtgtaggggtcggggttcgaaccccatacattccacttattta 24315368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 8133890 - 8133850
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtataatatatg 388  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  8133890 tgagcttagctcacttgataatggataatgcataatttatg 8133850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 29357798 - 29357841
Alignment:
Q  345 ccgtgagcttagctcacttgataatggataatgtataatatatg 388  Q
    |||||||||||||||||||||||| |||||||| || |||||||    
T  29357798 ccgtgagcttagctcacttgataagggataatgcattatatatg 29357841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 346 - 417
Target Start/End: Complemental strand, 39926600 - 39926530
Alignment:
Q  346 cgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacacc 417  Q
    ||||||||||||||| ||||||| ||| |||| |||||||||| | || |||||||||||| |||| |||||    
T  39926600 cgtgagcttagctcagttgataa-ggacaatgcataatatatgcaatgttcggggttcaaacctcaaacacc 39926530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 403
Target Start/End: Complemental strand, 46570070 - 46570011
Alignment:
Q  344 cccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttc 403  Q
    ||||||||||||||||||||||||| |||||||| ||| | |||| || || ||||||||    
T  46570070 cccgtgagcttagctcacttgataagggataatgcatagtttatgcaggggccggggttc 46570011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 17883887 - 17883928
Alignment:
Q  346 cgtgagcttagctcacttgataatggataatgtataatatatg 388  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  17883887 cgtgaccttagctcacttgata-tggataatgtataatatatg 17883928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 348 - 426
Target Start/End: Original strand, 24029985 - 24030063
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    |||| |||||||| ||||||| |||||||| | ||||| ||||| || |||||||| || | ||||||||||| |||||    
T  24029985 tgagtttagctcatttgataagggataatgcacaatatgtgtaggggccggggttcgaaccccagacaccccatttatt 24030063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 348 - 426
Target Start/End: Original strand, 31793468 - 31793546
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    ||||||||||||| ||| ||| |||||||| | ||||| || || ||||||||||| || | | |||||||||||||||    
T  31793468 tgagcttagctcatttgttaagggataatgcacaatatgtgcaggggtcggggttcgaaccccggacaccccacttatt 31793546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 46195914 - 46195992
Alignment:
Q  344 cccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccact 422  Q
    ||||||| ||||||| ||||||||| ||||||||||| || |||| || ||||||||||  || | | |||||||||||    
T  46195914 cccgtgaacttagcttacttgataagggataatgtattatgtatgcaggggtcggggtttgaaccccggacaccccact 46195992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 348 - 426
Target Start/End: Complemental strand, 48433805 - 48433727
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    ||||||||||||| ||| ||| |||||||| | ||||| || || || ||||||||||| | | |||||||||||||||    
T  48433805 tgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcaaaccccggacaccccacttatt 48433727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 14707155 - 14707122
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtata 381  Q
    ||||||||||||||||||||| ||||||||||||    
T  14707155 tgagcttagctcacttgataaaggataatgtata 14707122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 341 - 426
Target Start/End: Original strand, 27454004 - 27454089
Alignment:
Q  341 tgtcccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    |||||| ||||||||||||| ||| ||| |||||||| | ||| | || || ||||| ||||| || ||| |||||||||||||||    
T  27454004 tgtcccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggggtcgaggttcgaacctcggacaccccacttatt 27454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 34000260 - 34000320
Alignment:
Q  345 ccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaa 406  Q
    ||||||||||| |||| ||||||| |||||||| ||||||||||||  | ||||||||||||    
T  34000260 ccgtgagcttaactcagttgataa-ggataatgcataatatatgtaaggttcggggttcaaa 34000320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 423
Target Start/End: Complemental strand, 47194469 - 47194416
Alignment:
Q  370 ggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccactt 423  Q
    ||||| |||||||||||||||| | |||||||||||| | || |||||||||||    
T  47194469 ggatattgtataatatatgtagggatcggggttcaaatcccaaacaccccactt 47194416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 1194800 - 1194757
Alignment:
Q  345 ccgtgagcttagctcacttgataatggataatgtataatatatg 388  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  1194800 ccgtgagcttagcttacttgataagggataatgtataatatatg 1194757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 403
Target Start/End: Original strand, 20672941 - 20673000
Alignment:
Q  344 cccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttc 403  Q
    ||||||||||||||||||||| | | | |||||||||| |||||| || |||||||||||    
T  20672941 cccgtgagcttagctcacttggttaggtataatgtatattatatgcaggggtcggggttc 20673000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 423
Target Start/End: Original strand, 31705899 - 31705977
Alignment:
Q  344 cccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccactt 423  Q
    ||||||||||||||||| ||| || |||||| || || |||||||||| ||||||||||| || | | ||||||||||||    
T  31705899 cccgtgagcttagctcagttggta-tggatattgcattatatatgtaggggtcggggttcgaaccacggacaccccactt 31705977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 348 - 426
Target Start/End: Original strand, 17216958 - 17217036
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccacttatt 426  Q
    ||||||||||||| ||| ||| |||||||| ||||||| ||||| |||||| |||| ||   | |||||||||||||||    
T  17216958 tgagcttagctcatttggtaagggataatgcataatatgtgtaggggtcggagttcgaactccggacaccccacttatt 17217036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 12256587 - 12256527
Alignment:
Q  343 tcccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttc 403  Q
    |||||||||||||||||||||| ||   ||||||| |||||||||| || |||||||||||    
T  12256587 tcccgtgagcttagctcacttggtatgagataatgcataatatatgcaggggtcggggttc 12256527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 403
Target Start/End: Complemental strand, 31991856 - 31991801
Alignment:
Q  348 tgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttc 403  Q
    ||||||||||||||||| ||| |||||||| || ||||||| || |||||||||||    
T  31991856 tgagcttagctcacttggtaagggataatgcattatatatgcaggggtcggggttc 31991801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 9564533 - 9564580
Alignment:
Q  343 tcccgtgagcttagctcacttgataatggataatgtataatatatgta 390  Q
    ||||||||||||||||| |||| |||  ||||||||||||||||||||    
T  9564533 tcccgtgagcttagctcgcttggtaagagataatgtataatatatgta 9564580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 24202146 - 24202224
Alignment:
Q  344 cccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggttcaaaactcagacaccccact 422  Q
    ||||||||||||||||||||| ||| |||||||| || || |||| || || |||||||| || | | |||||||||||    
T  24202146 cccgtgagcttagctcacttggtaagggataatgcattatgtatgcaggggccggggttcgaaccccggacaccccact 24202224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 36755619 - 36755676
Alignment:
Q  345 ccgtgagcttagctcacttgataatggataatgtataatatatgtagtggtcggggtt 402  Q
    ||||||||||| |||||||| ||| |||||||| || |||||| ||| ||||||||||    
T  36755619 ccgtgagcttaactcacttggtaagggataatggattatatatataggggtcggggtt 36755676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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