View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_low_21 (Length: 279)
Name: NF16654_low_21
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_low_21 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 11445922 - 11446105
Alignment:
| Q |
6 |
caaaggtatatatagccttatattatgcccatgatctttatttctttcatataatatacttttgatgcacgtgttttactaacttgggcataaattgttt |
105 |
Q |
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| T |
11445922 |
caaaggtatatatagccttatattatgcccatgatctttatttctttcatataatatacttttgatgcacgtgttttactaacttgggcataaattgttt |
11446021 |
T |
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| Q |
106 |
gattttggctttttcttaccatgtgtgttattgttggaacacgcattttgacac--aagttgatgatatacttaccatatttat |
187 |
Q |
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| T |
11446022 |
gattttggctttttcttaccatgtgtgttattgttggaacacacattttgacacaaaagttgatgatatacttaccatatttat |
11446105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 205
Target Start/End: Complemental strand, 11547168 - 11546966
Alignment:
| Q |
6 |
caaaggtatatatagccttatattatgcccatgatctttatttctttcatataatatacttttgatgcacgtgttttactaacttgggcataaattgttt |
105 |
Q |
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| T |
11547168 |
caaaggtatatatagccttatattatgcccatgatctttatttctttcatataatatacttttgatgcacgtgttttactaacttgggcataaattgttt |
11547069 |
T |
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| Q |
106 |
gattttggctttttcttaccatgtgtgttattgttggaacacgcattttgacac--aagttgatgatatacttaccatatttatatattcgg-aagagaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||| || ||||||| |
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| T |
11547068 |
gattttggctttttcttaccatgtgtgttattgttggaacacacattttgacacaaaagttgatgatatacatacaatatttatatatttggcaagagaa |
11546969 |
T |
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| Q |
203 |
atg |
205 |
Q |
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| T |
11546968 |
atg |
11546966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 11506944 - 11506860
Alignment:
| Q |
70 |
atgcacgtgttttact-aacttgggcataaattgtttgattttggctttttcttaccatgtgtgttattgttggaacacgcattttgac |
157 |
Q |
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| T |
11506944 |
atgcacgtgttttacttaatttaggcataa----tttcattttggcatattcttaccatgtttgttattgtttgaacacacattttgac |
11506860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 1601 - 1517
Alignment:
| Q |
70 |
atgcacgtgttttact-aacttgggcataaattgtttgattttggctttttcttaccatgtgtgttattgttggaacacgcattttgac |
157 |
Q |
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| T |
1601 |
atgcacgtgttttacttaatttaggcataa----tttcattttggcatattcttaccatgtttgttattgtttgaacacacattttgac |
1517 |
T |
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