View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_low_23 (Length: 270)
Name: NF16654_low_23
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 7918482 - 7918728
Alignment:
| Q |
9 |
gaaaagaaaaaagccccacatcagaaatgttgtgaaatgttgaaagtcagtgatctataaaagcaacatatgacatattgtatcttttcatgagtgaagg |
108 |
Q |
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| T |
7918482 |
gaaaagaaaaaagccccacatcagaaatgttgtgaaatgttgaaagtcagtgatctataaaagcaacatatgacatattgtattttttcatgagtgaaag |
7918581 |
T |
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| Q |
109 |
tcttaatggccaggaccacactattggttaccgttcgtggataaaattggcttggaagcctggcttatgctattatttatccagatcctgtaacttatag |
208 |
Q |
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| T |
7918582 |
tcttaatggccaggaccacactatttgttacagttctaggataaaattggcttggaagcctggcttatgctattatttatccagatcctgtaacttatag |
7918681 |
T |
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| Q |
209 |
tatggttctcggttcattttgttaaacaaaaataaaatttataatgt |
255 |
Q |
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| T |
7918682 |
tatggttctcggttcattttgttaaacaaaaataaaatttataatgt |
7918728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 8447608 - 8447534
Alignment:
| Q |
10 |
aaaagaaaaaagccccacatcagaaatgttgtgaaatgttgaaagtcagtgatctataaaagcaacatatgacat |
84 |
Q |
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| T |
8447608 |
aaaagaaagaagtcccacatcggataatttgtgaaatgatgagagtgagtgagctataaaaccaacatatgacat |
8447534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 8437113 - 8437053
Alignment:
| Q |
10 |
aaaagaaaaaagccccacatcagaaatgttgtgaaatgttgaaagtcagtgatctataaaa |
70 |
Q |
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| T |
8437113 |
aaaagaaagaagtcccacatcggaaacgttgtgaaatgatgagagtgagtgagctataaaa |
8437053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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