View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_low_24 (Length: 264)
Name: NF16654_low_24
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 11571231 - 11571468
Alignment:
| Q |
12 |
agagatagagtcttattcaagaataacttatcagaaagcaagaagctttgaaaaagagagtacaagagcaacatttggaatcactaaggaaacaagaaga |
111 |
Q |
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| T |
11571231 |
agagatagagtctgagtcaagaataacttatcagaaagcaagaagctttggaaaagagagtacaagagcaacatttggaatcactaaggaagcaagaaga |
11571330 |
T |
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| Q |
112 |
actggaaagtaatttgaagaagaaacatgaggaaccttggctgagcaatcaaagacaaatgctggactgctatgatagacatgatcaataaaccgcaatc |
211 |
Q |
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| T |
11571331 |
aatggaaagtaatttgaagaagaaagatgaggaaccttggctgagcaatcaaagacaaatgctggactgctatgatggacatgatcaataaaccgcaatc |
11571430 |
T |
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| Q |
212 |
ttagagccttagtttcaccccctttacttcttgtttat |
249 |
Q |
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| T |
11571431 |
ttagagccttagttgcacaccctttacttcttgtttat |
11571468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 176
Target Start/End: Original strand, 13305949 - 13306090
Alignment:
| Q |
36 |
aacttatcagaaagcaagaagctttgaaaaagagagtacaagagcaacatttggaatcactaaggaaacaagaagaactggaaagtaatttgaagaagaa |
135 |
Q |
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| T |
13305949 |
aacttatcagaaagcaagaagctttggagaaaaatatgcaggagcaacacttagagtctctaaggaagcaagaagagctagaaagaaatatgaagaagca |
13306048 |
T |
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| Q |
136 |
acatgaggaacctt-ggctgagcaatcaaagacaaatgctgg |
176 |
Q |
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| T |
13306049 |
acatgaggagtctttggctgagcaagcaaagacaaatgctgg |
13306090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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