View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_low_25 (Length: 257)
Name: NF16654_low_25
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 38317269 - 38317502
Alignment:
| Q |
18 |
gttcttgcactgggagcagttcttgacccacggatgaagttttcgacgttggcttattgttactcaaaacttgatccatcaacctgcgagcagaagttgc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38317269 |
gttcttgcactgggagcagttcttgacccacggatgaagttttcgacgttggcttattgttactcaaaacttgatccatcaacctgcgagcagaagttgc |
38317368 |
T |
|
| Q |
118 |
aactagtaaagagaaagttgtacatgctatttgacaagtattctagcaaaagcacttcttctggcctaaaaagaactactcaggaccaatcttctaccat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38317369 |
aactagtaaagagaaagttgtacatgctatttgacaagtattctagcaaaagcacttcttctggcctaaaaagaactactcaggaccaatcttctaccat |
38317468 |
T |
|
| Q |
218 |
gccattgcaaaagaaattaaagtcttcatctcac |
251 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
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|
| T |
38317469 |
gccattgcaaaagaaattaaagtctttatctcac |
38317502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 38321364 - 38321597
Alignment:
| Q |
18 |
gttcttgcactgggagcagttcttgacccacggatgaagttttcgacgttggcttattgttactcaaaacttgatccatcaacctgcgagcagaagttgc |
117 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||| || |||||| |||||||||||||||||||| || |||| || |||||||| |
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| T |
38321364 |
gttcttgcattgggagcggttcttgacccacggatgaagttttctacattggctcattgttactcaaaacttgatgtttcggcctgtgaaaggaagttgc |
38321463 |
T |
|
| Q |
118 |
aactagtaaagagaaagttgtacatgctatttgacaagtattctagcaaaagcacttcttctggcctaaaaagaactactcaggaccaatcttctaccat |
217 |
Q |
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|
|| ||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| | ||||||||| ||||||| ||||||||| ||| |
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| T |
38321464 |
aagaagtaaagagtaagttgtacatgctatttgacaagtattctagcaaaagtatttcttctggggtgcaaagaactattcaggacgaatcttctagcat |
38321563 |
T |
|
| Q |
218 |
gccattgcaaaagaaattaaagtcttcatctcac |
251 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
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| T |
38321564 |
gccattgcaaaagaaattgaagtcttcatctcac |
38321597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 38309266 - 38309498
Alignment:
| Q |
18 |
gttcttgcactgggagcagttcttgacccacggatgaagttttcgacgttggcttattgttactcaaaacttgatccatcaacctgcgagcagaagttgc |
117 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||| ||| |||| || |||||||||||||||||||||||| || ||||||||||||| |||||||| |
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| T |
38309266 |
gttcttgcattgggagcggttcttgacccaaggataaagctttccacattggcttattgttactcaaaacttaatgcatcaacctgcgaaaggaagttgc |
38309365 |
T |
|
| Q |
118 |
aactagtaaagagaaagttgtacatgctatttgacaagtattctagcaaaagcacttcttctggcctaaaaagaactactcaggaccaatcttctaccat |
217 |
Q |
| |
|
| | ||||||||| |||||||||||||||||| ||||| ||||| ||||||| |||||||||||| | ||||||| | ||||||||||||||||| | |
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| T |
38309366 |
agcaagtaaagagcaagttgtacatgctatttcacaagaattcttgcaaaagtacttcttctggcgtgcaaagaacaattcaggaccaatcttctagtgt |
38309465 |
T |
|
| Q |
218 |
gccattgcaaaagaaattaaagtcttcatctca |
250 |
Q |
| |
|
||||||||||||||| |||||||||| |||||| |
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|
| T |
38309466 |
gccattgcaaaagaagttaaagtctttatctca |
38309498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 38326114 - 38326347
Alignment:
| Q |
18 |
gttcttgcactgggagcagttcttgacccacggatgaagttttcgacgttggcttattgttactcaaaacttgatccatcaacctgcgagcagaagttgc |
117 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| || ||||| || ||||||||||||||||||||||||||| |||||||||| || |||||||| |
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|
| T |
38326114 |
gttcttgcattgggagcggttcttgacccacggattaaattttcaacattggcttattgttactcaaaacttgatgcatcaacctgtgaaaggaagttgc |
38326213 |
T |
|
| Q |
118 |
aactagtaaagagaaagttgtacatgctatttgacaagtattctagcaaaagcacttcttctggcctaaaaagaactactcaggaccaatcttctaccat |
217 |
Q |
| |
|
||| ||||| || ||||||||||||||||||| ||||||||||||| || | |||||||||||| | |||||||| ||||| ||||||||| ||||| |
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|
| T |
38326214 |
aacaagtaaggacgaagttgtacatgctatttggcaagtattctagccaacgtacttcttctggcatgcaaagaactgttcagggccaatcttcgaccat |
38326313 |
T |
|
| Q |
218 |
gccattgcaaaagaaattaaagtcttcatctcac |
251 |
Q |
| |
|
| ||||||||||||| | ||||||| ||||||| |
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|
| T |
38326314 |
gtcattgcaaaagaactccaagtctttatctcac |
38326347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 38313858 - 38314089
Alignment:
| Q |
18 |
gttcttgcactgggagcagttcttgacccacggatgaagttttcgacgttggcttattgttactcaaaacttgatccatcaacctgcgagcagaagttgc |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||||| ||||||||||| || || | |||||||| |
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|
| T |
38313858 |
gttcttgcaatgggagcagttcttgacccacggatgaaattttcaagattggctgcttgttactcaaaactagatccatcaacttgtgaacggaagttgc |
38313957 |
T |
|
| Q |
118 |
aactagtaaagagaaagttgtacatgctatttgacaagtattctagcaaaagcacttcttctggcctaaaaagaactactcaggaccaatcttctaccat |
217 |
Q |
| |
|
|| |||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||||| | | ||| ||||| | ||| ||||||||||||||| |
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|
| T |
38313958 |
aaaaagtaaagacaaagttgtacatgctatttgccaagtactctagcaaaagtacttcttctagggtgcaaacaactatttagggccaatcttctaccat |
38314057 |
T |
|
| Q |
218 |
gccattgcaaaagaaattaaagtcttcatctc |
249 |
Q |
| |
|
||||||||||||||| | |||||||||||| |
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|
| T |
38314058 |
gccattgcaaaagaactctgagtcttcatctc |
38314089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 38300619 - 38300849
Alignment:
| Q |
18 |
gttcttgcactgggagcagttcttgacccacggatgaagttttcgacgttggcttattgttactcaaaacttgatccatcaacctgcgagcagaagttgc |
117 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||| ||| |||| || |||||| |||||||||||||||||||| ||||||| | || |||||||| |
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|
| T |
38300619 |
gttcttgcaatgggagcggttcttgacccaaggattaagctttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgc |
38300718 |
T |
|
| Q |
118 |
aactagtaaagagaaagttgtacatgctatttgacaagtattctagcaaaagcacttcttctggcctaaaaagaactactcaggaccaatcttctaccat |
217 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| || | |||||| || |||||||||||||||| ||| |
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|
| T |
38300719 |
aacaagtaaagagcaagttgtacatgctatttgacaagtattctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatcttctagcat |
38300818 |
T |
|
| Q |
218 |
gccattgcaaaagaaattaaagtcttcatct |
248 |
Q |
| |
|
|||||| ||| |||| ||||| |||| |||| |
|
|
| T |
38300819 |
gccatttcaagagaagttaaactctttatct |
38300849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 38306540 - 38306730
Alignment:
| Q |
42 |
gacccacggatgaagttttcgacgttggcttattgttactcaaaacttgatccatcaacctgcgagcagaagttgcaactagtaaagagaaagttgtaca |
141 |
Q |
| |
|
|||||||||||||| || || | ||||||| |||||||||||||||| ||||||||||| || || | |||||||||| |||||||| ||||||||||| |
|
|
| T |
38306540 |
gacccacggatgaaattctcaaggttggctgattgttactcaaaactcgatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtaca |
38306639 |
T |
|
| Q |
142 |
tgctatttgacaagtattctagcaaaagcacttcttctggcctaaaaagaactactcaggaccaatcttctaccatgccattgcaaaagaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| | ||| |||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38306640 |
tgctatttgacaagtattctagcaaaagtacttcttctggtatgcaaacaactgttcagggccaatcttctaccatgccattgcaaaagaa |
38306730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 38850076 - 38849835
Alignment:
| Q |
18 |
gttcttgcactgggagcagttcttgacccacggatgaagttttcgacgttggcttattgttactcaaaacttgatccatcaacctgcgagcagaagttgc |
117 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||| | || |||||||||||||| |||||||| ||| |||||||||| || |||| | | |
|
|
| T |
38850076 |
gttcttgcattgggagcggttcttgacccacggatgaagtttacaaccttggcttattgttattcaaaactggatgcatcaacctgtgaaaggaagctac |
38849977 |
T |
|
| Q |
118 |
aactagtaaagagaaagttgtacatgctatttgacaagtattctagcaaaagcacttcttctggcctaaaaagaact---------actcaggaccaatc |
208 |
Q |
| |
|
| | ||||||||||||||||| |||||||||||| ||| ||||| |||| |||||| || |||| | |||||||| | |||||||||||| |
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|
| T |
38849976 |
agcaagtaaagagaaagttgtgcatgctatttgagaagcattctggcaacagcactactgctggggttcaaagaactattaaggagaatcaggaccaatc |
38849877 |
T |
|
| Q |
209 |
ttctaccatgccattgcaaaagaaattaaagtcttcatctca |
250 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
38849876 |
ttctagcatgccattacaaaagaaattaaagtctttatctca |
38849835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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