View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16654_low_27 (Length: 250)
Name: NF16654_low_27
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 32486189 - 32486410
Alignment:
| Q |
18 |
aatagtgtgtttcatcatattaaatgcacatgcaagaatatatacttgtatagtgg-aaacactgcatttttatacctaactaaggtgtacagtgctagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32486189 |
aatagtgtgtttcatcatattaaatgcacatgcaagaatatatacttgtatagtgggaaacactgcatttttatacctaactaaggtgtacagtgctagt |
32486288 |
T |
|
| Q |
117 |
tcaaaggaaactaaatcaaataaaacaaaaatatagactacgatttctgaactttccataacattctgatttttgatgcagaatcctctctctccttcat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32486289 |
tcaaaggaaactaaatcaaataaaacaaaaatatagactacgatttctgaactttccataacattctgatttttgatgcagaatcctctctcttcttcat |
32486388 |
T |
|
| Q |
217 |
gaatggttatgatatctgtgct |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
32486389 |
gaatggttatgatatctgtgct |
32486410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University