View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_low_3 (Length: 530)
Name: NF16654_low_3
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 14 - 518
Target Start/End: Original strand, 33193384 - 33193887
Alignment:
| Q |
14 |
gcaagttggaaaagaacatcttgggaaaccaaaacctactacctgtttgtcttgggacagagtagtgtgggaatggatctaagcttagtactagtagtag |
113 |
Q |
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| T |
33193384 |
gcaagttggaaaagaacatcttgggaaaccaaaacctactacctgtttgtcttgggacagagtagtgtgggaatagatctaagcttagtactagtagtag |
33193483 |
T |
|
| Q |
114 |
ctgtgtcatatcatatgcatgcaattacacttttggataacatacctaaaaacatgtcacgacaatgtttaatgttgtgttgtgttgtgatgtgattaat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
33193484 |
ctgtgtcatatcatatgcatgcaattacacttttggataacatacctaaaaacatgtcacgaccatgtttaa-----tgttgtgttgtgatgtgattaat |
33193578 |
T |
|
| Q |
214 |
tagtggtacttatatgggaatcgcgttggattcacgttattcaacaaaaccaatttatttttgcatatatatagtcatttagtaggtggtattggagcaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33193579 |
tagtggtacttatatgggaatcgcgttggattcacgttattcaacaaaaccaatttatttttgcatatatatagtcatttagtaggtggtattggagcaa |
33193678 |
T |
|
| Q |
314 |
cccacatttcctttgctatttctatat------gctatactctttgatactactagtagtg-nnnnnnnntgctcttcaagtcattattgtaatggttga |
406 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33193679 |
cccacatttcctttgctatttttatatgctatagctatactctttgatactactagtagtgaaaaaaaaatgctcttcaagtcattattgtaatggttga |
33193778 |
T |
|
| Q |
407 |
gggtgagttttcagaattcatatatgctttctag-------tgtctagtgggtgttatgaaagcactctctaaccatatttaagcatcatattctgttgc |
499 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33193779 |
gggtgagttttcagaattcatatatgctttctagtgtctactgtctagtgggtgttatgaaagcactctc----------taagcatcatattctgttgc |
33193868 |
T |
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| Q |
500 |
agtcctcacctatgcttct |
518 |
Q |
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|||||||||||||| |||| |
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| T |
33193869 |
agtcctcacctatgattct |
33193887 |
T |
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