View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16654_low_33 (Length: 222)
Name: NF16654_low_33
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16654_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 54180458 - 54180630
Alignment:
| Q |
18 |
attgataacatcgacatgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattc |
117 |
Q |
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| T |
54180458 |
attgataacatcgacatgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattc |
54180557 |
T |
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| Q |
118 |
ttccaccaaccatgaaatgatccttaccatatactcttttccattgaggttgttgtgctaaccatttcactaa |
190 |
Q |
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| T |
54180558 |
ttccaccaaccatgaaatgatccttaccatatactcttttccattgaggttgttgtgctaaccatttcactaa |
54180630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 33 - 190
Target Start/End: Complemental strand, 22794673 - 22794516
Alignment:
| Q |
33 |
atgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattcttccaccaaccatga |
132 |
Q |
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| T |
22794673 |
atgttactagcttccggcagaaacattagctttgttccccaatcttcatctttatcgcttcctctcctaaaatcatatccaactcttccaccaaccatga |
22794574 |
T |
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| Q |
133 |
aatgatccttaccatatactcttttccattgaggttgttgtgctaaccatttcactaa |
190 |
Q |
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| T |
22794573 |
aatgatccttaccatacattcgtttccattgagattgttgtgctaaccatttcactaa |
22794516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 41948173 - 41948016
Alignment:
| Q |
30 |
gacatgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattcttccaccaacca |
129 |
Q |
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| T |
41948173 |
gacatgttacttacttctggcaagaacattagctttgttccccaattatgatctgaatcaccttctctcctaaaatcacaaccaattcttccaccaacca |
41948074 |
T |
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| Q |
130 |
tgaaatgatccttaccatatactcttttccattgaggttgttgtgctaaccatttcac |
187 |
Q |
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| T |
41948073 |
tgaaatgatctttaccatgcaatcttttccactgagattgttgtcctaaccatttcac |
41948016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 41942590 - 41942502
Alignment:
| Q |
99 |
ctaaaatcataacttattcttccaccaaccatgaaatgatccttaccatatactcttttccattgaggttgttgtgctaaccatttcac |
187 |
Q |
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||||||||| ||| |||||||||||||||||||||||||| ||||||| | ||||||||| |||| ||||||||||||||||||||| |
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| T |
41942590 |
ctaaaatcacaaccaattcttccaccaaccatgaaatgatctttaccatgcaatcttttccactgagattgttgtgctaaccatttcac |
41942502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 1210926 - 1210769
Alignment:
| Q |
30 |
gacatgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattcttccaccaacca |
129 |
Q |
| |
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|||||||||||| |||| || || ||||| | |||||||||||||| | || | ||||| | ||| | ||||||| ||| |||||||||||||||| |
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| T |
1210926 |
gacatgttacttacttctggcaagaacattagctttgttccccaattatgatctaaatcaccttctctccaaaaatcacaaccaattcttccaccaacca |
1210827 |
T |
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| Q |
130 |
tgaaatgatccttaccatatactcttttccattgaggttgttgtgctaaccatttcac |
187 |
Q |
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|||||||||| ||||||| | ||||||||| |||| ||||||||||||||||||||| |
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| T |
1210826 |
tgaaatgatctttaccatgcaatcttttccactgagattgttgtgctaaccatttcac |
1210769 |
T |
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