View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16654_low_5 (Length: 466)

Name: NF16654_low_5
Description: NF16654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16654_low_5
NF16654_low_5
[»] chr2 (9 HSPs)
chr2 (18-448)||(39839769-39840202)
chr2 (71-386)||(44798259-44798584)
chr2 (71-366)||(35161539-35161852)
chr2 (320-384)||(39844740-39844804)
chr2 (213-264)||(39844872-39844923)
chr2 (103-167)||(39844963-39845024)
chr2 (17-60)||(39845046-39845089)
chr2 (328-368)||(44631184-44631224)
chr2 (328-368)||(44798164-44798204)


Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 39840202 - 39839769
Alignment:
Q  18 agaataagaaagaagaagcaattatgatagttatagaaattagacaacgataagataagtgtgaattggggcttagggtttgttgaatttctcaaaatcc 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39840202 agaataagaaagaagaaccaattatgatagttatagaaattagacaacgataagataagtgtgaattggggcttagggtttgttcaatttctcaaaatcc 39840103  T
Q  118 ctaagccacaattctctacagtggaacacattattatcatcttccattaacaaacaatattgagaatagtgaatgaaacataacgaacgaacaacagaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39840102 ctaagccacaattctctacagtggaacacattattatcatcttccattaacaaacaatattgagaatagtgaatgaaacataacgaacgaacaacagaac 39840003  T
Q  218 aatataaatgttaaactcactcaccaggtggtggtgaccttcgagc---------------acgaagacaaaatctgctgactatttccgagggggtggt 302  Q
    |||||||||||||||||||||||||||||   ||||||||||||||               |||||||| |||||||||||||||||||||   || |||    
T  39840002 aatataaatgttaaactcactcaccaggt---ggtgaccttcgagcacgaagactcaatagacgaagacgaaatctgctgactatttccga---ggcggt 39839909  T
Q  303 aggagcagcagaagacgaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgttcaattccatttctcaaaatccctaagcg 402  Q
    | || |||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39839908 aagatcagca------gaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgttcaattccatttctcaaaatccctaagcg 39839815  T
Q  403 ggccccaattcacagaacaggcaagaaaatgaaaattattatgaat 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  39839814 ggccccaattcacagaacaggcaagaaaatgaaaattattatgaat 39839769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 71 - 386
Target Start/End: Original strand, 44798259 - 44798584
Alignment:
Q  71 gataagtgtgaattggggcttagggtttgttgaatttctcaaaatccctaag-ccacaattctctacagtggaacacattattatcatcttccattaaca 169  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||   |||| |||||||   ||||||||||||||||||||    
T  44798259 gataagtgtgaattggggcttagggtttgttcaatttctcaaaatccctaagcccccaattc---acagcggaacac---attatcatcttccattaaca 44798352  T
Q  170 aacaatattgagaatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtggtgaccttcgagc------ 263  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  44798353 aacaacattgagaatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtggtgaccttcgagcacgaag 44798452  T
Q  264 ---------acgaagacaaaatctgctgactatttccgagggggtggtaggagcagcagaagacgaagacgaagacgaaggatgatgttgcattttttga 354  Q
             |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44798453 actcaatagacgaagacgaaatctgctgactatttccaagggggtggtaggagcagcagaagacgaagacgaagacgaaggatgatgttccattttttga 44798552  T
Q  355 agtgcgtctgagagtttgttcaattccatttc 386  Q
    |||  |||||||||||||||||||||||||||    
T  44798553 agtaagtctgagagtttgttcaattccatttc 44798584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 71 - 366
Target Start/End: Complemental strand, 35161852 - 35161539
Alignment:
Q  71 gataagtgtgaattggggcttagggtttgttgaatttctcaaaatccctaagccacaattctctacagtggaacacattattatcatcttccattaacaa 170  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| |||||||||||||||   ||||||||||||||||    
T  35161852 gataagtgtgaattggggcttagggtttgttcaattactcaaaatccctaagccccaattctctaaagtggaacacattat---catcttccattaacaa 35161756  T
Q  171 acaatattgagaatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtggtgaccttcgagcacga--- 267  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  35161755 acaacattgagaatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtggtgaccttcgagcacgaaga 35161656  T
Q  268 ------------agacaaaatctgctgactatttccgagggggtggtaggagcagca------gaagacgaagacgaagacgaaggatgatgttgcattt 349  Q
                |||| ||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||| |||||    
T  35161655 ctcaatacacgaagacgaaatctgctgactatttccgagggggtggtaggagcagcagaagacgaagacgaagacgaagacgaaggatgatgttccattt 35161556  T
Q  350 tttgaagtgcgtctgag 366  Q
    ||||||||  |||||||    
T  35161555 tttgaagtaagtctgag 35161539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 39844804 - 39844740
Alignment:
Q  320 aagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgttcaattccatt 384  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||    
T  39844804 aagacgaagacgaaggatgatgttgcattttttgaagtgcgaccgagggtttgttcaattccatt 39844740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 39844923 - 39844872
Alignment:
Q  213 agaacaatataaatgttaaactcactcaccaggtggtggtgaccttcgagca 264  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39844923 agaataatataaatgttaaactcactcaccaggtggtggtgaccttcgagca 39844872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 39845024 - 39844963
Alignment:
Q  103 aatttctcaaaatccctaagccacaattctctacagtggaacacattattatcatcttccattaa 167  Q
    |||||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||    
T  39845024 aatttctcaaaatccctaagccccaattctctacagtggaacaca---ttatcatcttccattaa 39844963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 39845089 - 39845046
Alignment:
Q  17 aagaataagaaagaagaagcaattatgatagttatagaaattag 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39845089 aagaataagaaagaagaagcaattatgatagttatagaaattag 39845046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 44631184 - 44631224
Alignment:
Q  328 gacgaaggatgatgttgcattttttgaagtgcgtctgagag 368  Q
    ||||||||| ||||||||||||||||| || ||||||||||    
T  44631184 gacgaaggaggatgttgcattttttgatgtacgtctgagag 44631224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 44798164 - 44798204
Alignment:
Q  328 gacgaaggatgatgttgcattttttgaagtgcgtctgagag 368  Q
    ||||||||| ||||||||||||||||| || ||||||||||    
T  44798164 gacgaaggaggatgttgcattttttgatgtacgtctgagag 44798204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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