View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16655_low_1 (Length: 518)
Name: NF16655_low_1
Description: NF16655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16655_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 27 - 483
Target Start/End: Original strand, 10956990 - 10957430
Alignment:
| Q |
27 |
ataatgacatcagtgttttaatcttacaagtgaagacataagtcaaattaatcaaggaagctgcattttaatctactgatataatctttgtgtcatcttt |
126 |
Q |
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||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||||| |
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| T |
10956990 |
ataatgatagcagtgtcttaatcttacaagtgaagacataagtcaaattaatcaaggaagcgacattttaaactactgatacaatctttgtgccatcttt |
10957089 |
T |
|
| Q |
127 |
gagaagnnnnnnntatttattttcgttgtcttaagactaaaacaagttgtggatatcaaagatggcttcaagaatgctttcttttgtgtgttggccaagc |
226 |
Q |
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| T |
10957090 |
gagaaggaagaa-tatttattttcgttggcttaagactaaaataagttgtggatatgaaagttggtttcaagagtgctttcttatgtgtgttgaccaagc |
10957188 |
T |
|
| Q |
227 |
aaccgataacctctcatgcatataacttgcacttttggatataagatttatggtcatcattgctattgccaaatgtaacaaagtgcattggtatgtgcat |
326 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10957189 |
aaccgataacctctcatgcatgtaacttgcacttttggatataagatttatggtcatcattgctattgccaaatgtaacaaagtgcattggtatgtgcat |
10957288 |
T |
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| Q |
327 |
ttcttcatgattatcatcattgcattctacatgaacacgtttctctaaatggattgcttgaat-attctcatagtaaagcttctatattatttggcagga |
425 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||||| | | |
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| T |
10957289 |
ttcttcatgattatcatcattgcatactacatgaacacgtttctctaaatgga-------aatcattctcatagtaaagattctatattagttggctgaa |
10957381 |
T |
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| Q |
426 |
aatcattgggccaagcatacaagctgaaacacattatatctaatccttgctatctata |
483 |
Q |
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||| |||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
10957382 |
aat---------aagcatacaagctgaaacacattatagctaatccttgctatttata |
10957430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 169 - 483
Target Start/End: Complemental strand, 2025191 - 2024878
Alignment:
| Q |
169 |
caagttgtggatatcaaagatggcttcaagaatgctttcttttgtgtgttggccaagcaaccgataacctctcatgcatataacttgcacttttggatat |
268 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
2025191 |
caagttgtggatatcaaggatggcttcaagaatgatttctcttgtgtgttggccaagcaaccgataacttctaatgcatataacttgcacttttggatat |
2025092 |
T |
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| Q |
269 |
aagatttatggtcatcattgctattgccaaatgtaacaaagtgcattggtatgtgcatttcttcatgattatcatcattgcattctacatgaacacgttt |
368 |
Q |
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| T |
2025091 |
aagatttttggtcatcattgctattgccaaatgtaacaaagtgcattggtatgtgcatttcttcatgattatcatcattgcattctacatgaacacgttt |
2024992 |
T |
|
| Q |
369 |
ctctaaatggattgcttgaatattctcatagtaaagcttctatattatttggcaggaaatcattgggccaagcatacaagctgaaacacattatatctaa |
468 |
Q |
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||||||||||| ||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||| |||| ||| |||| |
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| T |
2024991 |
ctctaaatggaaggcttgaatactcttatagtaaagcttctatattacttggcaggaaatcatt-ggcaatgcatacaagctgaaatacatcataactaa |
2024893 |
T |
|
| Q |
469 |
tccttgctatctata |
483 |
Q |
| |
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||||| ||||||||| |
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| T |
2024892 |
tcctttctatctata |
2024878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 2025324 - 2025226
Alignment:
| Q |
18 |
aattttgctataatgacatcagtgttttaatcttacaagtgaagacataagtcaaattaatcaaggaagctgcattttaatctactgatataatctttg |
116 |
Q |
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|||||||||||||||| | |||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
2025324 |
aattttgctataatgatagcagtgttttaattttacaagtgaagatataagtcaaattaatcaaagaagctgcattttaatctactgatacaatctttg |
2025226 |
T |
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