View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16655_low_13 (Length: 238)
Name: NF16655_low_13
Description: NF16655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16655_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 25349981 - 25349813
Alignment:
| Q |
11 |
gaaaagaagaatgttgatttaacgctattagatgacaatgacaataaatgaaaatgtaaagtaattgttggatctttaactcaaggtaactggaggatag |
110 |
Q |
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| T |
25349981 |
gaaaagaagaatgctgatttaacattgatagatgacaatggcaataaatggaaatgtagagtagttgttggaactttaactcagagtaaccggaggatac |
25349882 |
T |
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| Q |
111 |
gtggccaatggaaaataatgattgatgcaagtaacattcagcacggatcatacatgatcataggtgcac |
179 |
Q |
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| T |
25349881 |
gtggccaatggaaaacaatgattgatgcacgcaacattaagcacgggtcatacatgatcataggtgcac |
25349813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 25355675 - 25355507
Alignment:
| Q |
11 |
gaaaagaagaatgttgatttaacgctattagatgacaatgacaataaatgaaaatgtaaagtaattgttggatctttaactcaaggtaactggaggatag |
110 |
Q |
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| T |
25355675 |
gaaaagaagaatgctgatttaacattgatagatgacaatggcaataaatggaaatgtagagtagttgttggaactttaactcagagtaaccggaggatac |
25355576 |
T |
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| Q |
111 |
gtggccaatggaaaataatgattgatgcaagtaacattcagcacggatcatacatgatcataggtgcac |
179 |
Q |
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| T |
25355575 |
gtggccaatggaaaacaatgattgatgcacgcaacattaagcacgggtcatacatgatcataggtgcac |
25355507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 272992 - 272884
Alignment:
| Q |
113 |
ggccaatggaaaataatgattgatgcaagtaacattcagcacggatcatacatgatcataggtgcaccgataccaagaatagttaacactgcattcatta |
212 |
Q |
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| T |
272992 |
ggccaatggaaaacaatgattgatgcaagtaacatttagcacggatcatacatgatcataggtgcaccgataccaagaacagttaacactgcatttatta |
272893 |
T |
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| Q |
213 |
gctttaaac |
221 |
Q |
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|||||||| |
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| T |
272892 |
actttaaac |
272884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 875218 - 875326
Alignment:
| Q |
113 |
ggccaatggaaaataatgattgatgcaagtaacattcagcacggatcatacatgatcataggtgcaccgataccaagaatagttaacactgcattcatta |
212 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
875218 |
ggccaatggaaaacaatgattgatgcaagtaacatttagcacggatcatacatgatcataggtgcaccgataccaagaacagttaacactgcattcatta |
875317 |
T |
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| Q |
213 |
gctttaaac |
221 |
Q |
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|||||||| |
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| T |
875318 |
actttaaac |
875326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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