View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16655_low_2 (Length: 449)
Name: NF16655_low_2
Description: NF16655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16655_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 14 - 433
Target Start/End: Original strand, 32768067 - 32768498
Alignment:
| Q |
14 |
cacagaccctagcatctatttctcacctagaaaacacaaacacatacatgcaataaaaca---acaagagtagaattggataaacaacaacacatgcatg |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32768067 |
cacaaaccctagcatctatttctcacctagaaaacacaaacacatacatgcaataaaacaacaacaagagtagaattggataaacaacaacacatgcatg |
32768166 |
T |
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| Q |
111 |
caataaaacaacaccaacaccagtagaattacattaaggaaaaaattgaatataccaccatcgtcttcgtccgtgtcgcggtaaggagccaaagtaggcg |
210 |
Q |
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| T |
32768167 |
caataaaacaacaccaacaccagtagaattacactaaggaaaaaattgaatataccaccatcgtcttcgtccgtgtcgcggtaaggagccaaagtaggcg |
32768266 |
T |
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| Q |
211 |
tgatttcattcttaacctgctgctgcacacgtgaagttcccactccagactcctcactcaacaccccagccattccctgatcaagaaatatttcagtaac |
310 |
Q |
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| T |
32768267 |
tgatttcattctcaacctgctgctgcacacgtgaagttcccactccagactcctcactcaacaccccagccattccctgatcaagaaatatttcagtaac |
32768366 |
T |
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| Q |
311 |
attcccacattgtatcatatttcagtaagagaaaaatgattaagtaaatggaggaggt---------gaaggagaagaacctggaatcaaacagtagcgg |
401 |
Q |
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| T |
32768367 |
attctcacattgtatcatatttcagtaagagaaaaatgattaagtaaatggaggaggtgattgaatagaaggagaagaacctggaatcaaacagtagcgg |
32768466 |
T |
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| Q |
402 |
ttgtgaaaagcacaaccctaaacaaaattatt |
433 |
Q |
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| T |
32768467 |
ttgtgaaaagcataaccctaaacaaaattatt |
32768498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 32758481 - 32758559
Alignment:
| Q |
231 |
tgctgcacacgtgaagttcccactccagactcctcactcaacaccccagccattccctgatcaagaaatatttcagtaa |
309 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
32758481 |
tgctgcccacgtgaatttcccactccagactcctcactcaacactccagccattccctaatcaagaaatatttcagtaa |
32758559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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