View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16655_low_3 (Length: 423)

Name: NF16655_low_3
Description: NF16655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16655_low_3
NF16655_low_3
[»] chr6 (2 HSPs)
chr6 (284-416)||(7373782-7373914)
chr6 (237-270)||(35129628-35129661)
[»] chr4 (4 HSPs)
chr4 (118-411)||(48517552-48517841)
chr4 (118-362)||(48514681-48514924)
chr4 (118-323)||(12704760-12704967)
chr4 (316-388)||(12703803-12703875)
[»] chr5 (4 HSPs)
chr5 (118-388)||(37075296-37075564)
chr5 (237-267)||(25215291-25215321)
chr5 (237-267)||(25279442-25279472)
chr5 (304-384)||(37411156-37411237)
[»] chr8 (3 HSPs)
chr8 (118-385)||(33293492-33293760)
chr8 (339-411)||(19488692-19488763)
chr8 (237-270)||(19954272-19954305)
[»] chr2 (2 HSPs)
chr2 (118-223)||(14918366-14918471)
chr2 (237-270)||(14104590-14104623)
[»] scaffold0018 (1 HSPs)
scaffold0018 (237-270)||(171777-171810)
[»] chr1 (3 HSPs)
chr1 (236-281)||(6789660-6789705)
chr1 (237-270)||(2493880-2493913)
chr1 (237-270)||(24159861-24159894)
[»] chr3 (2 HSPs)
chr3 (237-270)||(48432408-48432441)
chr3 (237-270)||(48435890-48435923)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 284 - 416
Target Start/End: Original strand, 7373782 - 7373914
Alignment:
Q  284 tgaatgatgcaacaaatttttcttacctcgtcgtccccaagataaaacaaccttttcaaacttgactatgagtactctctgcacaaagagaactcatcaa 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7373782 tgaatgatgcaacaaatttttcttacctcgtcgtccccaagataaaacaaccttttcaaacttgactatgagtactctttgcacaaagagaactcatcaa 7373881  T
Q  384 accaaacaccctcaactatatcaatattcttcg 416  Q
    |||||||||||||||||||||||||||| ||||    
T  7373882 accaaacaccctcaactatatcaatattgttcg 7373914  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 35129628 - 35129661
Alignment:
Q  237 gagtcgcagactaggtcgctctctttaagacgtt 270  Q
    ||||||||||||||||||||||||||||||||||    
T  35129628 gagtcgcagactaggtcgctctctttaagacgtt 35129661  T

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Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 118 - 411
Target Start/End: Original strand, 48517552 - 48517841
Alignment:
Q  118 tggaacatttcttgaacacttaaattgttgctacatacgtcgaatactttaaatcatttctttaaataatcaaactctaacacacacaaaataattttgt 217  Q
    |||||||||||||||||||||||||||||| |  | | |||||| |||| |||||||||||  ||| ||||||||| |||||||   |||||||| |  |    
T  48517552 tggaacatttcttgaacacttaaattgttgatgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaactttaacaca---aaaataatatcat 48517648  T
Q  218 tagatacacaatataagccgagtcgcagactaggtcgctctctttaagacgttccgcgcctctgcatgaatgatgcaacaaatttttcttacctcgtcgt 317  Q
    |||||||| |||    || ||||||| ||||||||||||||||||||||||||| ||| |||||| |||||  ||||||| || |||||| |||||||||    
T  48517649 tagatacaaaattggggctgagtcgcggactaggtcgctctctttaagacgttctgcggctctgcctgaattgtgcaacagatctttcttgcctcgtcgt 48517748  T
Q  318 ccccaagataaaacaaccttttcaaacttgactatgagtactctctgcacaaagagaactcatcaaaccaaacaccctcaactatatcaatatt 411  Q
    ||||| ||||||||| || |||||||||| | ||||| |||||| |||||||||| |||||  |||||| ||||||||||| |||| |||||||    
T  48517749 ccccaggataaaacagccctttcaaacttaagtatgactactctttgcacaaagaaaactctccaaacc-aacaccctcaattataccaatatt 48517841  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 118 - 362
Target Start/End: Original strand, 48514681 - 48514924
Alignment:
Q  118 tggaacatttcttgaacacttaaattgttgctacatacgtcgaatactttaaatcatttctttaaataatcaaactctaacacacacaaaataattttgt 217  Q
    |||| ||||||||||||||||||||||||| |  | | |||||| |||| |||||||||||  ||| ||||||||| ||||||| | |||||||| | ||    
T  48514681 tggaccatttcttgaacacttaaattgttgttgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaactttaacacaaa-aaaataatatcgt 48514779  T
Q  218 tagatacacaatataagccgagtcgcagactaggtcgctctctttaagacgttccgcgcctctgcatgaatgatgcaacaaatttttcttacctcgtcgt 317  Q
    | |||||| |||    || ||||||||||||||||||||||||||||||||||||||| |||||| |||||  | ||| | || |||||| |||||||||    
T  48514780 tcgatacaaaattggggctgagtcgcagactaggtcgctctctttaagacgttccgcggctctgcctgaattgtacaatagatctttcttgcctcgtcgt 48514879  T
Q  318 ccccaagataaaacaaccttttcaaacttgactatgagtactctc 362  Q
    ||||| ||| |||||||| ||||||| |||| |||||| ||||||    
T  48514880 ccccaggatgaaacaaccctttcaaatttgagtatgagaactctc 48514924  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 323
Target Start/End: Complemental strand, 12704967 - 12704760
Alignment:
Q  118 tggaacatttcttgaacactt-aaattgttgctacatacgtcgaatactttaaatcatttctttaaataat-caaactctaacacacacaaaataatttt 215  Q
    ||||||||||||||||||||| |||| |||| | |||  |||||| |||| ||| || ||||  ||| ||| ||||||  ||  |||||||||||||| |    
T  12704967 tggaacatttcttgaacactttaaatagttgttgcatctgtcgaacacttgaaaacaattctgcaaaaaattcaaacttgaaagcacacaaaataattat 12704868  T
Q  216 gttagatacacaatataagccgagtcgcagactaggtcgctctctttaagacgttccgcgcctctgcatgaatgatgcaacaaatttttcttacctcgtc 315  Q
    |||||||||| |||    || ||||||| ||||||||||||||||||||||| ||  ||| |||||| | |||| |||||||  | |||||| ||||||     
T  12704867 gttagatacaaaattcgggctgagtcgcggactaggtcgctctctttaagaccttttgcggctctgcctcaatggtgcaacatttatttcttgcctcgtt 12704768  T
Q  316 gtccccaa 323  Q
    ||||||||    
T  12704767 gtccccaa 12704760  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 12703875 - 12703803
Alignment:
Q  316 gtccccaagataaaacaaccttttcaaacttgactatgagtactctctgcacaaagagaactcatcaaaccaa 388  Q
    |||||||  ||||||||||| || ||||||| | ||||| |||||||||||||||||||| ||| ||||||||    
T  12703875 gtccccagaataaaacaacccttccaaacttaagtatgaatactctctgcacaaagagaattcaccaaaccaa 12703803  T

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Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 118 - 388
Target Start/End: Original strand, 37075296 - 37075564
Alignment:
Q  118 tggaacatttcttgaacacttaaattgttgctacatacgtcgaatactttaaatcatttctttaaataatcaaactctaacacacacaaaataattttgt 217  Q
    |||||||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||  ||| ||||||||| ||| ||| |  |||||| |||||    
T  37075296 tggaacatttcttgaacacttaaattgttgctgcatatgtcgaacacttgaaatcatttctgcaaagaatcaaactttaaaacata--aaataactttgt 37075393  T
Q  218 tagatacacaatataagccgagtcgcagactaggtcgctctctttaagacgttccgcgcctctgcatgaatgatgcaacaaatttttcttacctcgtcgt 317  Q
    |||||||| ||| | | | ||||   ||| || ||||||||||||||||||||| ||| |||||| |||||| ||||||| || ||||||  ||||||||    
T  37075394 tagatacaaaatttgaactgagttatagattatgtcgctctctttaagacgttctgcggctctgcctgaatggtgcaacatatatttcttggctcgtcgt 37075493  T
Q  318 ccccaagataaaacaaccttttcaaacttgactatgagtactctctgcacaaagagaactcatcaaaccaa 388  Q
    | ||| |||||||||  | || ||||||| | |||||||||||| ||||||||||||||||| ||||||||    
T  37075494 ctccaggataaaacattcattacaaacttaagtatgagtactctatgcacaaagagaactcaccaaaccaa 37075564  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 25215321 - 25215291
Alignment:
Q  237 gagtcgcagactaggtcgctctctttaagac 267  Q
    |||||||||||||||||||||||||||||||    
T  25215321 gagtcgcagactaggtcgctctctttaagac 25215291  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 25279472 - 25279442
Alignment:
Q  237 gagtcgcagactaggtcgctctctttaagac 267  Q
    |||||||||||||||||||||||||||||||    
T  25279472 gagtcgcagactaggtcgctctctttaagac 25279442  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 37411237 - 37411156
Alignment:
Q  304 tcttacctcgtcgtccccaagataaaacaaccttttcaaacttgac-tatgagtactctctgcacaaagagaactcatcaaa 384  Q
    ||||||||| ||||| ||| ||||||||| ||||   |||||| |  |||||||||||||| ||||||||||||||| ||||    
T  37411237 tcttacctcatcgtctccaggataaaacagccttccaaaacttaaaatatgagtactctcttcacaaagagaactcaccaaa 37411156  T

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Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 118 - 385
Target Start/End: Original strand, 33293492 - 33293760
Alignment:
Q  118 tggaacatttcttgaacacttaaattgttgctacatacgtcgaatactttaaatcatttctttaaataatcaaactct-aacacacacaaaataattttg 216  Q
    |||||||||||||||||||||||| ||||||| ||||| ||||| |||| |||| ||||||  ||| ||||||||||| |||||||| |||||||||| |    
T  33293492 tggaacatttcttgaacacttaaaatgttgctgcatacatcgaacacttgaaattatttctgcaaaaaatcaaactcttaacacacaaaaaataatttcg 33293591  T
Q  217 ttagatacacaatataagccgagtcgcagactaggtcgctctctttaagacgttccgcgcctctgcatgaatgatgcaacaaatttttcttacctcgtcg 316  Q
    ||| ||||| ||| |  || ||||||||||||| ||| |||| ||||| | |||||| | |||||| |||||  | ||||| || |||||| ||||||||    
T  33293592 ttaaatacaaaatttgggctgagtcgcagactacgtcactctttttaatatgttccgtggctctgcctgaatagtacaacatatctttcttgcctcgtcg 33293691  T
Q  317 tccccaagataaaacaaccttttcaaacttgactatgagtactctctgcacaaagagaactcatcaaac 385  Q
    || |||  |||||||| |||||  |||||||  ||||||||||| ||||||||||||||| || |||||    
T  33293692 tctccataataaaacagcctttcaaaacttgtgtatgagtactcactgcacaaagagaacccagcaaac 33293760  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 19488763 - 19488692
Alignment:
Q  339 tcaaacttgactatgagtactctctgcacaaagagaactcatcaaaccaaacaccctcaactatatcaatatt 411  Q
    ||||||||||||||||||||| | ||||||| ||||||||| |||| | |||||||||||  |||||||||||    
T  19488763 tcaaacttgactatgagtactatttgcacaacgagaactca-caaaaccaacaccctcaatcatatcaatatt 19488692  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 19954272 - 19954305
Alignment:
Q  237 gagtcgcagactaggtcgctctctttaagacgtt 270  Q
    |||||||||||||| |||||||||||||||||||    
T  19954272 gagtcgcagactagatcgctctctttaagacgtt 19954305  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 223
Target Start/End: Original strand, 14918366 - 14918471
Alignment:
Q  118 tggaacatttcttgaacac-ttaaattgttgctacatacgtcgaatactttaaatcatttctttaaataatcaaactctaacacacacaaaataattttg 216  Q
    ||||||||||||||||||| ||||||||||||| |||   ||||| ||||  ||| ||||||  ||| ||||| |||  |||||||| ||||||||||||    
T  14918366 tggaacatttcttgaacactttaaattgttgctgcatctatcgaacacttggaattatttctgcaaaaaatcatacttgaacacaca-aaaataattttg 14918464  T
Q  217 ttagata 223  Q
    |||||||    
T  14918465 ttagata 14918471  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 14104590 - 14104623
Alignment:
Q  237 gagtcgcagactaggtcgctctctttaagacgtt 270  Q
    ||||||| ||||||||||||||||||||||||||    
T  14104590 gagtcgcggactaggtcgctctctttaagacgtt 14104623  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 171810 - 171777
Alignment:
Q  237 gagtcgcagactaggtcgctctctttaagacgtt 270  Q
    ||||||||||||||||||||||||||||||||||    
T  171810 gagtcgcagactaggtcgctctctttaagacgtt 171777  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 6789705 - 6789660
Alignment:
Q  236 cgagtcgcagactaggtcgctctctttaagacgttccgcgcctctg 281  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||||    
T  6789705 cgagtcgcagactaggttgctctctttaagacgttctgcgactctg 6789660  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 2493913 - 2493880
Alignment:
Q  237 gagtcgcagactaggtcgctctctttaagacgtt 270  Q
    |||||||| |||||||||||||||||||||||||    
T  2493913 gagtcgcaaactaggtcgctctctttaagacgtt 2493880  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 24159894 - 24159861
Alignment:
Q  237 gagtcgcagactaggtcgctctctttaagacgtt 270  Q
    ||||||| ||||||||||||||||||||||||||    
T  24159894 gagtcgcggactaggtcgctctctttaagacgtt 24159861  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 48432408 - 48432441
Alignment:
Q  237 gagtcgcagactaggtcgctctctttaagacgtt 270  Q
    ||||||| ||||||||||||||||||||||||||    
T  48432408 gagtcgcggactaggtcgctctctttaagacgtt 48432441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 48435923 - 48435890
Alignment:
Q  237 gagtcgcagactaggtcgctctctttaagacgtt 270  Q
    ||||||| ||||||||||||||||||||||||||    
T  48435923 gagtcgcggactaggtcgctctctttaagacgtt 48435890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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