View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16655_low_5 (Length: 360)
Name: NF16655_low_5
Description: NF16655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16655_low_5 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 65 - 360
Target Start/End: Original strand, 51369323 - 51369618
Alignment:
| Q |
65 |
aattgaaagggaaacacatgaaatatgcttaactgtcggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatc |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51369323 |
aattgaaagggaaacacatgaaatatgcttaactgtcggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatc |
51369422 |
T |
|
| Q |
165 |
ttttgaactgaaaaaatttcccatatctttagcatttttcctgtacgtactaccttcctcatccactattaccaacctcaatgttttggctacagagtcc |
264 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51369423 |
ttttgaactgaaaatttttcccatatctttagcatttttcctgcacgtgctaccttcctcatccactattaccaacctcaatgttttggctacagagtcc |
51369522 |
T |
|
| Q |
265 |
ctagtaaaggacccatcttgctcactccttggtacttcaacagccacnnnnnnnncttctagtaatcttgcatacaaacactggtcaagtatataa |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51369523 |
ctagtaaaggacccatcttgctcactccttggtacttcaacagccactttcttttcttctagtaatcttgcatacaaacactggtcaagtatataa |
51369618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 84 - 304
Target Start/End: Complemental strand, 29955111 - 29954891
Alignment:
| Q |
84 |
gaaatatgcttaactgtcggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaaaattt |
183 |
Q |
| |
|
||||||||||||| || | || ||||||||| ||||||||||||||| || | |||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
29955111 |
gaaatatgcttaattgacataacgaactctatacttttgaagagcagcaatgacatctttaatgtattcattgtgaagatcttttgaactgaaaaccttt |
29955012 |
T |
|
| Q |
184 |
cccatatctttagcatttttcctgtacgtactaccttcctcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatctt |
283 |
Q |
| |
|
|||||||||| ||||| |||| ||| |||| |||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
29955011 |
tccatatctttggcattattccgatacatacttccttcctcatccactattgccaacctcaatgtttgggctatcgagtccctagtaaaggacccatctt |
29954912 |
T |
|
| Q |
284 |
gctcactccttggtacttcaa |
304 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
29954911 |
gctcactccttggtacctcaa |
29954891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 51369270 - 51369307
Alignment:
| Q |
9 |
gacatcatcatctcatggactattattgcaataagatt |
46 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51369270 |
gacatcaacatctcatggactattattgcaataagatt |
51369307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 102 - 311
Target Start/End: Complemental strand, 11532406 - 11532197
Alignment:
| Q |
102 |
ggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaaaatttcccatatctttagcattt |
201 |
Q |
| |
|
|||||||||||||| ||||||||||||| | || ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
11532406 |
ggaatgaactctatacttttgaagagcaacaataaaatcttcaatgtattgattgtgaagatcttttgaactgaaaacctttcccatatctttggcattg |
11532307 |
T |
|
| Q |
202 |
ttcctgtacgtactaccttcctcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatcttgctcactccttggtactt |
301 |
Q |
| |
|
|| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| | |
|
|
| T |
11532306 |
tttctgtacgtacttccttcctcatccattattaccaacctcaatgttttggctactgagtccctagtaaaggacccgtctttctcactccttggtacct |
11532207 |
T |
|
| Q |
302 |
caacagccac |
311 |
Q |
| |
|
||| |||||| |
|
|
| T |
11532206 |
caatagccac |
11532197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 11532670 - 11532634
Alignment:
| Q |
9 |
gacatcatcatctcatggactattattgcaataagat |
45 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11532670 |
gacatcaacatctcatggactattattgcaataagat |
11532634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 85 - 310
Target Start/End: Complemental strand, 20493245 - 20493020
Alignment:
| Q |
85 |
aaatatgcttaactgtcggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaaaatttc |
184 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||| |||||| | || ||| |||||||||||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
20493245 |
aaatatgcttaattgttggaatgaactctatgtttttggagagcatcaatgaaacctttaatgtattcattgtgaagatcttttgaaccgaaaatctttc |
20493146 |
T |
|
| Q |
185 |
ccatatctttagcatttttcctgtacgtactaccttcctcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatcttg |
284 |
Q |
| |
|
|||||||||| |||||||| || || |||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20493145 |
ccatatctttggcattttttctatagatacttccttcctcatccactattgccaacctcaatgttttggctatagagtccctagtaaaggacccatcttg |
20493046 |
T |
|
| Q |
285 |
ctcactccttggtacttcaacagcca |
310 |
Q |
| |
|
|||| |||||||||| |||| ||||| |
|
|
| T |
20493045 |
ctcattccttggtacctcaatagcca |
20493020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 102 - 311
Target Start/End: Complemental strand, 1355557 - 1355348
Alignment:
| Q |
102 |
ggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaaaatttcccatatctttagcattt |
201 |
Q |
| |
|
|||| |||| |||| ||| | ||||||||| || || || | ||| ||||||||||||| ||||||||||||||||| || |||| ||||||||||| |
|
|
| T |
1355557 |
ggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaaccttccccaactctttagcattg |
1355458 |
T |
|
| Q |
202 |
ttcctgtacgtactaccttcctcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatcttgctcactccttggtactt |
301 |
Q |
| |
|
|||||| | |||| |||||||||||||| ||| |||||||||||| | || ||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
1355457 |
ttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtactt |
1355358 |
T |
|
| Q |
302 |
caacagccac |
311 |
Q |
| |
|
|||||||||| |
|
|
| T |
1355357 |
caacagccac |
1355348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 123 - 311
Target Start/End: Complemental strand, 1362422 - 1362234
Alignment:
| Q |
123 |
aagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaaaatttcccatatctttagcatttttcctgtacgtactaccttcc |
222 |
Q |
| |
|
||||||||| || | ||| | ||| |||||||| |||| ||||||||||||||||| || |||| ||||||||||| |||||| | |||| |||||| |
|
|
| T |
1362422 |
aagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaactttccccaactctttagcattgttcctgaaactacttccttcc |
1362323 |
T |
|
| Q |
223 |
tcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatcttgctcactccttggtacttcaacagccac |
311 |
Q |
| |
|
|||||||| ||| |||||||||||| | || ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
1362322 |
tcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccac |
1362234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 82 - 360
Target Start/End: Complemental strand, 14589536 - 14589258
Alignment:
| Q |
82 |
atgaaatatgcttaactgtcggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaaaat |
181 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| || || || | ||||||||||| ||||||||||||||||||||| | || | |
|
|
| T |
14589536 |
atgaaatatgcttaattgtcggaatgaactctaaacttttgaagagtggcaatgaagtttttaatgtattcattgtgaagatcttttgaactcacaacct |
14589437 |
T |
|
| Q |
182 |
ttcccatatctttagcatttttcctgtacgtactaccttcctcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatc |
281 |
Q |
| |
|
||||||| ||||| ||||| |||||||| |||| ||||||||||||||||||||||||||||||||||| || ||| |||||||| ||| || |||||| |
|
|
| T |
14589436 |
ttcccatttctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacagtccctattaatggccccatc |
14589337 |
T |
|
| Q |
282 |
ttgctcactccttggtacttcaacagccacnnnnnnnncttctagtaatcttgcatacaaacactggtcaagtatataa |
360 |
Q |
| |
|
| |||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||| |||||||||| |||| |
|
|
| T |
14589336 |
tggctcactccttggtacctcaacagccactttcttttcttctagtactcttgcaaacaaacattggtcaagtaaataa |
14589258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 82 - 360
Target Start/End: Complemental strand, 14623194 - 14622916
Alignment:
| Q |
82 |
atgaaatatgcttaactgtcggaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaaaat |
181 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| ||||||||||| || || |||| ||||||||||| ||||||||||||||||||||| | || | |
|
|
| T |
14623194 |
atgaaatatgtttaattgtcggaatgaactctaaacttttgaagagtggcaatgaaatttttaatgtattcattgtgaagatcttttgaactcacaacct |
14623095 |
T |
|
| Q |
182 |
ttcccatatctttagcatttttcctgtacgtactaccttcctcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatc |
281 |
Q |
| |
|
||||||| ||||| ||||| |||||||| |||| ||||||||||||||||||||||||||||||||||| || ||| |||||||| ||| || |||||| |
|
|
| T |
14623094 |
ttcccatgtctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacagtccctattaatggccccatc |
14622995 |
T |
|
| Q |
282 |
ttgctcactccttggtacttcaacagccacnnnnnnnncttctagtaatcttgcatacaaacactggtcaagtatataa |
360 |
Q |
| |
|
| |||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||| |||||||||| |||| |
|
|
| T |
14622994 |
tggctcactccttggtacctcaacagccactttcttttcttctagtactcttgcaaacaaacattggtcaagtaaataa |
14622916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 103 - 296
Target Start/End: Complemental strand, 12847070 - 12846877
Alignment:
| Q |
103 |
gaatgaactctatgcttttgaagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaaaatttcccatatctttagcatttt |
202 |
Q |
| |
|
|||||||| |||| ||||||||||||||| || ||||||| |||||||| |||||||| |||||||||||||||| || ||||| ||||| ||||| | |
|
|
| T |
12847070 |
gaatgaaccctatacttttgaagagcagcaatgaaatcttcaatgtattttttgtgaagttcttttgaactgaaaatcttgcccatctcttttgcattgt |
12846971 |
T |
|
| Q |
203 |
tcctgtacgtactaccttcctcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatcttgctcactccttgg |
296 |
Q |
| |
|
||||||| || | ||||| |||||| |||| | |||||||||||| ||||||| |||||||||||||||||||||| | |||||| ||||| |
|
|
| T |
12846970 |
tcctgtaaataattccttcggcatccattattgctaacctcaatgttagggctacaaagtccctagtaaaggacccatcctcctcacttcttgg |
12846877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University