View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16655_low_6 (Length: 345)
Name: NF16655_low_6
Description: NF16655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16655_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 47941740 - 47941422
Alignment:
| Q |
18 |
tttcttagctaatttattgcagtataatgaatgtatatgaattataagtttgtggtgtgatcatgcaggatgcacatcttgcgacatttggatacaattt |
117 |
Q |
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| T |
47941740 |
tttcttagctaatttattgcagtataatgaatgtatatgaattataagtttgtggtgtgatcatgcaggatgcacatcttgcgacatttggatacaattt |
47941641 |
T |
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| Q |
118 |
tataggcgccctaggaaatattaatatatggaatccaaaggttgaacgaccagaagatttcactactgctcaaatatggcttaaggctgccaatggtctt |
217 |
Q |
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| T |
47941640 |
tataggcgccctaggaaatattaatatatggaatccaaaggttgaacgaccagaagatttcactactgctcaaatatggcttaaggctgccaatggtctt |
47941541 |
T |
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| Q |
218 |
gaaattgaaaccatcgaagcaggttgggcggttagtgatcgatcaccctccctcaaagtcaagatcaaccattaattaacacatacttttctagttgttt |
317 |
Q |
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| T |
47941540 |
gaaattgaaaccatcgaagcaggttgggcggttagtgatcgatcaccctccctcaaagtcaagatcaaccattaattaacacatacttttctagttgttt |
47941441 |
T |
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| Q |
318 |
cttagctatatagtataat |
336 |
Q |
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| T |
47941440 |
cttagctatatagtataat |
47941422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 47947602 - 47947463
Alignment:
| Q |
75 |
tgatcatgcaggatgcacatcttgcgacatttggatacaattttataggcgccctaggaaatattaatatatggaatccaaaggttgaacgaccagaaga |
174 |
Q |
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| T |
47947602 |
tgatcatgcaggatgcacatcttgcgacattaggattcaattttataggcgcacaagcaaacatcaacgtatggaatccaaatgttgaacaaccagaaga |
47947503 |
T |
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| Q |
175 |
tttcactactgctcaaatatggcttaaggctgccaatggt |
214 |
Q |
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| T |
47947502 |
tttcactacggctcaaatgtggcttaaggctaacaatggt |
47947463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 71 - 253
Target Start/End: Complemental strand, 47920954 - 47920769
Alignment:
| Q |
71 |
ggtgtgatcatgcaggatgcacatcttgcgacatttggatacaattttataggcgccctaggaaatattaatatatggaatccaaaggttgaacgaccag |
170 |
Q |
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| T |
47920954 |
ggtgtgatcgtgcaggatgcacttcttgtggcatatgcattccaatttataggggcacaagcgaatattaatgtgtggaatccaaaagttgaaaaaccag |
47920855 |
T |
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| Q |
171 |
aagatttcactactgctcaaatatggcttaaggctgccaatggtcttgaaa---ttgaaaccatcgaagcaggttgggcggttagt |
253 |
Q |
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| T |
47920854 |
aagattttactactgctcaaatatggcttaaggctgccaatggtcctgataattttgaaagcatcgaagcaggctggacggttagt |
47920769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 47910304 - 47910203
Alignment:
| Q |
112 |
caattttataggcgccctaggaaatattaatatatggaatccaaaggttgaacgaccagaagatttcactactgctcaaatatggcttaaggctgccaat |
211 |
Q |
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| T |
47910304 |
caattttataggcgcccaagcgaatattaacgtatggaatccaaaggttgaaaaaccagaagatttcactactgctcaaatgtggcttaaggctaccaat |
47910205 |
T |
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| Q |
212 |
gg |
213 |
Q |
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|| |
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| T |
47910204 |
gg |
47910203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 47929288 - 47929151
Alignment:
| Q |
69 |
gtggtgtgatcatgcaggatgcacatcttgcgacatttggatacaattttataggcgccctaggaaatattaatatatggaatccaaaggttgaacgacc |
168 |
Q |
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| T |
47929288 |
gtggtgtgatcatgcaggatgctcatcttgtgacatacggatataattatataggcgcacaagcaaatatcaacgtttggaatccaaaggttgacaaacc |
47929189 |
T |
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| Q |
169 |
agaagatttcactactgctcaaatatggcttaaggctg |
206 |
Q |
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| T |
47929188 |
agaagatttcactaccgctcaaatgtggcttaaggctg |
47929151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 256
Target Start/End: Original strand, 3859589 - 3859772
Alignment:
| Q |
73 |
tgtgatcatgcaggatgcacatcttgcgacatttggatacaattttataggcgccctaggaaatattaatatatggaatccaaaggttgaacgaccagaa |
172 |
Q |
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| T |
3859589 |
tgtgatcatgcagggagtacatcttgcaacatcaggatcaaattttattggtgcagaagcagatattaatgtttggaatccaaaagttgacctaccagat |
3859688 |
T |
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| Q |
173 |
gatttcactactgctcaaatatggcttaaggctgccaatggtcttgaaattgaaaccatcgaagcaggttgggcggttagtgat |
256 |
Q |
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| T |
3859689 |
gattccaccacagctcaaatttggctgaaggctggaaatggtaatgagtttgaaagcattgaagcaggctggatggttagtgat |
3859772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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