View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16655_low_7 (Length: 322)
Name: NF16655_low_7
Description: NF16655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16655_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 31221935 - 31222236
Alignment:
| Q |
6 |
agaagcaaaggatgcaaaaacgtgttcatgataagcttcatatttgaaacaagtgaatggaataaatgaaatcaatgcatgaatgtgtaagggttatatt |
105 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31221935 |
agaaacaaaagatgcaaagacgtgttcatgataagcttcatatttgaaacaagtgaatggaataaatgaaatcaatccatgaatgtgtaagggttatatt |
31222034 |
T |
|
| Q |
106 |
aagcaattaattgtagcaagagatacgttcctggaaagagatatatggaaaatagaccactttatgagttaatgaaatgaaaagtcgatagtaatgcgaa |
205 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31222035 |
aagcaattaattgtagcaagagatgcgttcctggaaagagatatatggaaaatagaccactttatgagttaatgaaatgaaaagtcgatagtaatgcgaa |
31222134 |
T |
|
| Q |
206 |
atagacaaaaatttaagtaagggcccgtttactttca-ttttcctgcttttttatgtgaaaatatacacttgtttacacttacaatattttaagttgtta |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31222135 |
atagacaaaaatttaagtaagggcccgtttactttcatttttcctgcttttttatttgaaaatatacacttgtttacacttacaatattttaagttgtta |
31222234 |
T |
|
| Q |
305 |
ac |
306 |
Q |
| |
|
|| |
|
|
| T |
31222235 |
ac |
31222236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 31202382 - 31202696
Alignment:
| Q |
6 |
agaagcaaaggatgcaaaaacgtgttcatgataagcttcatatttgaaacaagtgaatggaataaatgaaatcaatgcatgaatgtgtaagggttatatt |
105 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31202382 |
agaaacaaaagatgcaaagacgtgttcatgataagcttcatatttgaaacaagtgaatggaataaatgaaatcaatgcatgaatgtgtaagggttatatt |
31202481 |
T |
|
| Q |
106 |
aagcaattaattgtagcaagagatacgttcctggaaagagatatatggaaaatagaccactttatgagttaatgaaatgaaaagtcgatagtaatgcgaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||| ||||||||| ||| |
|
|
| T |
31202482 |
aagcaattaattgtagcaagagatacgttcctggaaagagatatatggaaaatataccactctatgacttaatgaaatgaaaagtcaatagtaatgggaa |
31202581 |
T |
|
| Q |
206 |
atagacaaaaatttaagtaagggcccgtttactttcattttc-ctgcttttt--------------tatgtgaaaatatacacttgtttacacttacaat |
290 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| |||||||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
31202582 |
atagacaaaa-tttaagtaagggcccgtgtactttcattttttctgcttttcattcaactaataagtataagataatatacacttgtttacacttacaat |
31202680 |
T |
|
| Q |
291 |
attttaagttgttaac |
306 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31202681 |
attttaagttgttaac |
31202696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 31183356 - 31183595
Alignment:
| Q |
6 |
agaagcaaaggatgcaaaaacgtgttcatgataagcttcatatttgaaacaagtgaatggaataaa-tgaaatcaatgcatgaatgtgtaagggttatat |
104 |
Q |
| |
|
|||| |||| |||||||| || ||||||||||| ||||||||||||||||||||||||| || ||| |||||||| || |||| ||||||||||||||| |
|
|
| T |
31183356 |
agaaacaaaagatgcaaagacttgttcatgataggcttcatatttgaaacaagtgaatgaaagaaaatgaaatcagtggttgaaagtgtaagggttatat |
31183455 |
T |
|
| Q |
105 |
taagcaattaattgtagcaagagatacgttcctggaaagagatatatggaaaatagaccactttatgagttaatgaaatgaaaagtcgatagtaatgcga |
204 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| || |
|
|
| T |
31183456 |
taagcaatta-ttgtagcatgagatacgttcccggaaagagatatatggaaaatagaccactctatgacttaatgaaatgaaaagtcaatagtaatgtga |
31183554 |
T |
|
| Q |
205 |
aatagacaaaaatttaagtaagggcccgtttactttcatttt |
246 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
31183555 |
aatagac-aaaatttaagtaagggcccgtgtactttcatttt |
31183595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 31183633 - 31183674
Alignment:
| Q |
265 |
aatatacacttgtttacacttacaatattttaagttgttaac |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31183633 |
aatatacacttgtttacacttacaatattttaagttgttaac |
31183674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 31202801 - 31202834
Alignment:
| Q |
265 |
aatatacacttgtttacacttacaatattttaag |
298 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
31202801 |
aatatacacttgtttacactgacaatattttaag |
31202834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University