View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16655_low_8 (Length: 308)
Name: NF16655_low_8
Description: NF16655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16655_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 47712712 - 47713012
Alignment:
| Q |
1 |
tcaaacgatcacgaaccctataagcataatgagcctcctccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47712712 |
tcaaacgatcacgaaccctataagcataatgcgcctcctccacaccttcatactcctccctaggaaaaatcctcttcgcgatactctcacacaacaatgt |
47712811 |
T |
|
| Q |
101 |
cgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712812 |
cgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaa |
47712911 |
T |
|
| Q |
201 |
caatcagaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttct |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712912 |
caatcagcaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttct |
47713011 |
T |
|
| Q |
301 |
c |
301 |
Q |
| |
|
| |
|
|
| T |
47713012 |
c |
47713012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 19785774 - 19785474
Alignment:
| Q |
1 |
tcaaacgatcacgaaccctataagcataatgagcctcctccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| || ||||||||||| ||||||||||||| | || |
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| T |
19785774 |
tcaaacgatcacgaaccctataagcataatgtgcctcctccacaccttcatattcctcccgagggaagatcctctttgcaatactctcacacagaagagt |
19785675 |
T |
|
| Q |
101 |
cgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaa |
200 |
Q |
| |
|
|| | |||||| ||||||||||| ||||| |||||||| |||||||| || || || ||| | ||||| |||||||||||| || ||| ||||| ||| |
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|
| T |
19785674 |
cgatcgatcaaaggaagagtcaacagaagggcaccatttagcagcaaggctgattttattgggcaacccagatttcaaaaactgaagatccttcttcaaa |
19785575 |
T |
|
| Q |
201 |
caatcagaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttct |
300 |
Q |
| |
|
||||||| |||||||||||| ||| |||||||||||||||||||||||||||| | | || || |||||||||||||||||||| ||||| |||||| |
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|
| T |
19785574 |
caatcagcaaaatgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttct |
19785475 |
T |
|
| Q |
301 |
c |
301 |
Q |
| |
|
| |
|
|
| T |
19785474 |
c |
19785474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 19795813 - 19796113
Alignment:
| Q |
1 |
tcaaacgatcacgaaccctataagcataatgagcctcctccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |||| || || ||||||||| | || |
|
|
| T |
19795813 |
tcaaccgatcacgaaccctataagcataatgtgcctcctccacaccttcatactcctccctagggaagatcttcttggcaatggtctcacacagaagagt |
19795912 |
T |
|
| Q |
101 |
cgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaa |
200 |
Q |
| |
|
| || |||||| ||||||||||| ||||| |||||||| ||||||||||| || || ||| |||||| ||||||||||||| | ||| ||||| ||| |
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|
| T |
19795913 |
tgaccgatcaaaggaagagtcaacagaagggcaccatttagcagcaagactgattttattgggcgacccggatttcaaaaactcgagatccttcttcaaa |
19796012 |
T |
|
| Q |
201 |
caatcagaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttct |
300 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||||||||||| || || | |||| || ||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
19796013 |
caatcagcgaaatgatcagagatacaatcgtgaagaaacttaaaattgggatcggtagtataacgatcaacaagcttcttagctaatgcaatcctcttct |
19796112 |
T |
|
| Q |
301 |
c |
301 |
Q |
| |
|
| |
|
|
| T |
19796113 |
c |
19796113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 15835120 - 15835420
Alignment:
| Q |
1 |
tcaaacgatcacgaaccctataagcataatgagcctcctccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| || |||||||| || || ||||||||| | || |
|
|
| T |
15835120 |
tcaaacgatcacgaaccctataagcataatgcgcctcctccacaccttcatattcctcccgagggaatatcctcttggcaatggtctcacacagaagagt |
15835219 |
T |
|
| Q |
101 |
cgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaa |
200 |
Q |
| |
|
| || |||||| ||||||| || || || |||||||| ||||||||||| || ||| ||| |||||| ||||||||||||||| ||| ||||| ||| |
|
|
| T |
15835220 |
tgaccgatcaaaggaagagtaaagagaggggcaccatttagcagcaagactgatttttctgggtgacccagatttcaaaaactcaagatccttcttcaaa |
15835319 |
T |
|
| Q |
201 |
caatcagaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttct |
300 |
Q |
| |
|
||||||| |||||||| ||| ||||||| |||||| |||||||||| |||||||||||| || || |||||||||||||||||||| ||||| |||||| |
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|
| T |
15835320 |
caatcagcaaaatgatgagagatacaattatgaaggaacttaaaatcagggtcacgattgtatcgatcaacaagcttcttagccaaggcaatcctcttct |
15835419 |
T |
|
| Q |
301 |
c |
301 |
Q |
| |
|
| |
|
|
| T |
15835420 |
c |
15835420 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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