View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16655_low_9 (Length: 298)
Name: NF16655_low_9
Description: NF16655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16655_low_9 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 1653442 - 1653739
Alignment:
| Q |
1 |
cagttcaacatattgtttttggcatagctggatcatctcagctttggtaacggaggaaggaatatattagactatggtggcgtcccaatgacatgcgtgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1653442 |
cagttcaacatattgtttttggcatagctggatcatctcagctttggaaacggaggaaggaatatattagactatggtggcgtcccaatgacatgcgtgg |
1653541 |
T |
|
| Q |
101 |
ccatgtctggttagaggaaaaagtggttgaagaacatggagatgagttattaccccctaccatgatttctggagacatttcgtacttccgttacactaat |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1653542 |
ccatgtgtggttagaggaaaaagtggttgaagaacatggagatgagttattaccccctaccatgatttctggagacatttcgtacttccgttacactaat |
1653641 |
T |
|
| Q |
201 |
cccataggtcacccttctggcctccggatttctcgcattatcaaagaaagctttcgccttggtctctcagatgtgcgttggtttgttctatgtgatga |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1653642 |
cccataggtcacccttctggcctccggatttctcgcattatcaaagaaagctttcgccttggtctctcagatgtgcgttggtttgtcctatgtgatga |
1653739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University