View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16656_high_1 (Length: 513)

Name: NF16656_high_1
Description: NF16656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16656_high_1
NF16656_high_1
[»] chr1 (3 HSPs)
chr1 (115-349)||(3092852-3093098)
chr1 (402-494)||(3093123-3093215)
chr1 (6-97)||(3091712-3091803)
[»] chr3 (1 HSPs)
chr3 (208-282)||(30687878-30687952)
[»] chr7 (1 HSPs)
chr7 (208-273)||(47727570-47727635)
[»] chr8 (3 HSPs)
chr8 (402-485)||(39435770-39435852)
chr8 (208-282)||(39435946-39436018)
chr8 (288-329)||(39435887-39435928)
[»] chr4 (1 HSPs)
chr4 (238-276)||(40122759-40122797)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 9e-96; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 115 - 349
Target Start/End: Original strand, 3092852 - 3093098
Alignment:
Q  115 tcaaaataaccaatcaaaatttgcatctaagagaatcaactctgagatggaatgtattctacggtccaaaaattatatttcttttcactttagatcactg 214  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3092852 tcaaaataaccaatcaaaatttgcatctaagagaatcaactcggagatggaatgtattctacggtccaaaaattatatttcttttcactttagatcactg 3092951  T
Q  215 aaattgttgacagggtgaaaatccattcatgctggtggcttaaggtttataagcctcatacttt------------tgtccggtggactaaatcaatagt 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||            |||| || ||||||||||| || |    
T  3092952 aaattgttgacagggtgaaaatccattcatgctggtggcttaaggtttataaacctcatacttttgtcgattttcatgtctggcggactaaatcattaat 3093051  T
Q  303 ttgtctaggttattccacattgtaatgcggtaatttggttgcacctg 349  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  3093052 ttgtctaggttattccaccttgtaatgcggtaatttggttgcacctg 3093098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 402 - 494
Target Start/End: Original strand, 3093123 - 3093215
Alignment:
Q  402 tcttttgatactttgtactattttctggttaggcacaccttatgtttaatttggttgcttttctctccggtatttatttaattaaactctacg 494  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3093123 tcttttgatactttgtactatttcctggttaggcacaccttatgtttaatttggttgcttttctctccggtatttatttaattaaactctacg 3093215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 3091712 - 3091803
Alignment:
Q  6 agtgatatgaatatacacaatttaaaataaattattgcaatatctcatcccatatttatccttaatttgcagaaacaaaaaatgcatatttt 97  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3091712 agtgatatgaatatacaaaatttaaaataaattattgcaatatctcatcccatatttatccttaatttgcaaaaacaaaaaatgcatatttt 3091803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 30687878 - 30687952
Alignment:
Q  208 atcactgaaattgttgacagggtgaaaatccattcatgctggtggcttaaggtttataagcctcatacttttgtc 282  Q
    |||| |||||||||||||| ||||||| |  ||||||  ||||||||||||||||||||  ||||||||||||||    
T  30687878 atcattgaaattgttgacaaggtgaaattttattcataatggtggcttaaggtttataaatctcatacttttgtc 30687952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 47727570 - 47727635
Alignment:
Q  208 atcactgaaattgttgacagggtgaaaatccattcatgctggtggcttaaggtttataagcctcat 273  Q
    |||| |||||||||||| ||||||||  |||||||||  |||| ||||||||||||||||||||||    
T  47727570 atcattgaaattgttgatagggtgaacttccattcatagtggttgcttaaggtttataagcctcat 47727635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 485
Target Start/End: Complemental strand, 39435852 - 39435770
Alignment:
Q  402 tcttttgatactttgtactattttctggttaggcacaccttatgtttaatttggttgcttttctctccggtatttatttaatta 485  Q
    |||||| |||||||||||| |||||||||||| ||||| || || |||| ||||| |||||| | ||||||||| ||| |||||    
T  39435852 tctttttatactttgtactgttttctggttagacacacattgtgcttaacttggtcgctttt-tttccggtattcattaaatta 39435770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 39436018 - 39435946
Alignment:
Q  208 atcactgaaattgttgacagggtgaaaatccattcatgctggtggcttaaggtttataagcctcatacttttgtc 282  Q
    |||| |||||||||| ||| ||||||| | || || || |||||||||||||||  |||||||||||||||||||    
T  39436018 atcattgaaattgttaacatggtgaaatttcaatcctggtggtggcttaaggtt--taagcctcatacttttgtc 39435946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 39435928 - 39435887
Alignment:
Q  288 gactaaatcaatagtttgtctaggttattccacattgtaatg 329  Q
    |||||||||| |||||||||||||||| ||||| ||||||||    
T  39435928 gactaaatcactagtttgtctaggttactccaccttgtaatg 39435887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 276
Target Start/End: Complemental strand, 40122797 - 40122759
Alignment:
Q  238 cattcatgctggtggcttaaggtttataagcctcatact 276  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  40122797 cattcatggtggtggcttaaggcttataagcctcatact 40122759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University