View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16656_high_3 (Length: 423)
Name: NF16656_high_3
Description: NF16656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16656_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 5 - 410
Target Start/End: Complemental strand, 3236255 - 3235850
Alignment:
| Q |
5 |
gagagagaagaaacaccaattgcttaacattaacctaaggctcaataatgtgaaatttatgcaaggaaaaatggattttggcattagtttggcaatgtta |
104 |
Q |
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| T |
3236255 |
gagagagaagaaacaccaattgcttaacattaacctaaggctcaataatgtgaaatttatgcaaggaaaaatggattttggcattagtttggcaatgtta |
3236156 |
T |
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| Q |
105 |
atagtaaaaaccatatgcatagcctcaatattaaggacctagggaatgaaagaaatcaaatagagcaaggtgttaaaatttccatgttgtttagtatcat |
204 |
Q |
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| T |
3236155 |
atagtaaaaaccatatgcatagcctcaatattaaggacctagggaatgaaagaaatcaaatagagcaaggtgttaaaatttccatgttgtttagtatcat |
3236056 |
T |
|
| Q |
205 |
agttcattttgagaaaaatcaaatttgttgctaacaaggtcaaggtgggagaaaaacattgagaagggacacatagaattgcttgtataagtgtgattca |
304 |
Q |
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| T |
3236055 |
agttcattttgagaaaaatcaaatttgttgctaacaaggtcaaggtgggagaaaaacattgagaagggacacatagaattgcttgtataagtgtgattca |
3235956 |
T |
|
| Q |
305 |
gatttcaaagtgaagttttgaagaaaattcttgaagtcaagaattgggttcatcaacatatgnnnnnnnnncttttccggaaattatttcgacatatgtt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
3235955 |
gatttcaaagtgaagttttgaagaaaattcttgaagtcaagaattgggttcatcaacataagtttttttttgttttccggaaattatttcgacatatgtt |
3235856 |
T |
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| Q |
405 |
gttgat |
410 |
Q |
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|||||| |
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| T |
3235855 |
gttgat |
3235850 |
T |
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