View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16656_low_1 (Length: 748)

Name: NF16656_low_1
Description: NF16656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16656_low_1
NF16656_low_1
[»] chr6 (24 HSPs)
chr6 (16-533)||(31564316-31564843)
chr6 (312-678)||(33385314-33385670)
chr6 (312-678)||(33259583-33259959)
chr6 (592-748)||(31564838-31564987)
chr6 (111-275)||(33416366-33416536)
chr6 (486-678)||(33416152-33416345)
chr6 (493-678)||(24631975-24632161)
chr6 (452-634)||(9165228-9165418)
chr6 (681-745)||(33414724-33414788)
chr6 (25-154)||(33385707-33385837)
chr6 (681-745)||(33293130-33293194)
chr6 (335-441)||(24631864-24631970)
chr6 (679-740)||(33279079-33279139)
chr6 (681-745)||(33258352-33258416)
chr6 (681-740)||(33395215-33395274)
chr6 (449-523)||(29274300-29274376)
chr6 (40-99)||(33281320-33281376)
chr6 (681-727)||(28873045-28873091)
chr6 (28-82)||(33416538-33416592)
chr6 (40-99)||(33301947-33302003)
chr6 (343-418)||(281808-281881)
chr6 (592-633)||(33282241-33282282)
chr6 (592-633)||(33398042-33398083)
chr6 (592-633)||(33408952-33408993)
[»] chr5 (7 HSPs)
chr5 (120-274)||(30653203-30653360)
chr5 (401-523)||(11684346-11684468)
chr5 (382-447)||(30653373-30653438)
chr5 (449-530)||(32059660-32059742)
chr5 (486-530)||(10391269-10391313)
chr5 (342-393)||(11457158-11457209)
chr5 (491-530)||(29115328-29115367)
[»] scaffold0428 (6 HSPs)
scaffold0428 (312-548)||(3802-4047)
scaffold0428 (592-678)||(3704-3791)
scaffold0428 (679-740)||(15114-15174)
scaffold0428 (681-745)||(2473-2537)
scaffold0428 (40-99)||(12876-12932)
scaffold0428 (592-633)||(11970-12011)
[»] chr2 (7 HSPs)
chr2 (681-745)||(17447760-17447825)
chr2 (28-157)||(17443374-17443503)
chr2 (312-377)||(17443537-17443602)
chr2 (449-530)||(34339039-34339122)
chr2 (482-522)||(3102617-3102657)
chr2 (340-417)||(14299588-14299663)
chr2 (449-510)||(7103554-7103615)
[»] chr8 (8 HSPs)
chr8 (340-418)||(13000381-13000457)
chr8 (457-525)||(26717178-26717246)
chr8 (435-521)||(5290566-5290649)
chr8 (467-530)||(26716527-26716590)
chr8 (340-418)||(30191098-30191174)
chr8 (397-483)||(10079082-10079168)
chr8 (397-446)||(30389108-30389157)
chr8 (449-523)||(34788498-34788574)
[»] chr3 (6 HSPs)
chr3 (342-418)||(43115093-43115167)
chr3 (452-530)||(38462197-38462277)
chr3 (450-523)||(22232749-22232824)
chr3 (457-539)||(3015928-3016011)
chr3 (340-418)||(37273171-37273247)
chr3 (319-415)||(24624250-24624344)
[»] chr7 (4 HSPs)
chr7 (342-455)||(3468614-3468725)
chr7 (449-530)||(3610811-3610894)
chr7 (401-522)||(26935573-26935696)
chr7 (486-564)||(22388014-22388093)
[»] chr1 (2 HSPs)
chr1 (467-520)||(44207697-44207750)
chr1 (340-391)||(15581316-15581367)
[»] scaffold0024 (1 HSPs)
scaffold0024 (435-508)||(21335-21410)
[»] chr4 (3 HSPs)
chr4 (467-521)||(32920489-32920543)
chr4 (457-524)||(47970240-47970309)
chr4 (437-507)||(55437345-55437415)


Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 16 - 533
Target Start/End: Original strand, 31564316 - 31564843
Alignment:
Q  16 acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564316 acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttca 31564415  T
Q  116 gacaaaggctcgagtaatggtttcaatttcatcttatttgct----gtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564416 gacaaaggctcgagtaatggtttcaatttcatcttatttgcttaatgtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt 31564515  T
Q  212 gaatttatacatgtatttcaatttttacatgt------aaaagagaaaaaatgaattatacttccattttgcccatcttctcatattgttttgcctcttg 305  Q
    ||||||||||||||||||||||||||||||||      |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  31564516 gaatttatacatgtatttcaatttttacatgtaaatgtaaaagagaaaaaattaattatacttccattttgcccatcttttcatattgttttgcctcttg 31564615  T
Q  306 tggattgatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttt 405  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31564616 tggattgatatatttgaacttatacactcatattagcacttgtgagactgtttcgaagagttaatggaaacaactaatgacatgtccacaaaagttgttt 31564715  T
Q  406 tcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacat 505  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  31564716 tcagcttatttccatatgttgtctagaaaagcttatgaaaatcacttgtaggaaaacagtgtgacttcattttatcttgttataaaaatagcttatacat 31564815  T
Q  506 aagcaattttatgataagtgtttatctt 533  Q
    | ||||||||||||||||||||||||||    
T  31564816 atgcaattttatgataagtgtttatctt 31564843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 312 - 678
Target Start/End: Complemental strand, 33385670 - 33385314
Alignment:
Q  312 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 411  Q
    |||| ||||||||||||  | | |||| ||||||||||| ||||||| |||||||| ||||||||| |  |||||||||||| |||||||||||||||||    
T  33385670 gatgcatttgaacttatctactgatataagcacttgtgaaactgtttggaagagtttatggaaacagctcatgacatgtccataaaagttgttttcagct 33385571  T
Q  412 tatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagc 509  Q
    | ||||| ||   ||||||||||||||||||||||| |||||||| | |  |||||||||||||||||||  ||| ||||||||| |||||||||| |||    
T  33385570 tttttccataaactgtctagaaaagcttatgaaaatagcttatagcata--agtatgacttcattttatcttttgttataaaaattgcttatacatcagc 33385473  T
Q  510 aattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacctatctttgaattcttaca 609  Q
    | || ||||  ||||| ||||||| |||| ||| |||||| | ||||           |||||| |||| ||||||||||||||||||||||||||||||    
T  33385472 acttatatgtaaagtgcttatcttataagttttcattaggctgttta-----------tcttaggtttccagcctgttcacctatctttgaattcttaca 33385384  T
Q  610 taaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 678  Q
    |||| ||| ||||  |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33385383 taagatttctaatcgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33385314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 312 - 678
Target Start/End: Complemental strand, 33259959 - 33259583
Alignment:
Q  312 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 411  Q
    |||||||||||||||||| | | |||| ||||||||  | ||||||| |||||||| ||||||||  | ||||||||||||| ||||| ||||||||||     
T  33259959 gatgtatttgaacttatatattgatataagcacttgccaaactgtttggaagagtttatggaaacggctaatgacatgtccataaaagctgttttcagcc 33259860  T
Q  412 tatttccgtatgttgtctagaaaagcttatgaaaatcgcttatag-------gaaaacagtatgacttcattttatctt--gctataaaaatagcttata 502  Q
      ||| | |||  ||| ||||||||||||||||||| ||||||||       |||||||||||||||||| ||||||||  | |||||||||||||||||    
T  33259859 attttacatatactgtatagaaaagcttatgaaaatagcttatagcatataggaaaacagtatgacttcaatttatcttttgttataaaaatagcttata 33259760  T
Q  503 cataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacctatctttgaat 602  Q
    |||||||| || ||||  |||   ||||||| ||||||| ||||||| | ||||||||||| | ||||||| |||| |||||  | || |||||||||||    
T  33259759 cataagcacttatatgtaaagctcttatcttataagcttgaattaggctgtttatccaaacaaggtcttaggtttccagccttcttacatatctttgaat 33259660  T
Q  603 tcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 678  Q
    ||||||||||| ||| || || |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33259659 tcttacataagatttatagttgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33259583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 592 - 748
Target Start/End: Original strand, 31564838 - 31564987
Alignment:
Q  592 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtcccctttgaattgcagcaactatatcaccaacacttgcatgaaaaggcgc 691  Q
    ||||||| |||||||||||||| ||| || |||||||||||||||||   |||||||| ||||||||||       |||||||||| |||||||||||||    
T  31564838 tatctttaaattcttacataagatttctattttttaaatgtctattccaccccctttggattgcagcaa-------accaacacttacatgaaaaggcgc 31564930  T
Q  692 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgag 748  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564931 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgag 31564987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 111 - 275
Target Start/End: Complemental strand, 33416536 - 33416366
Alignment:
Q  111 cttcagacaaaggctcgagtaatggtttcaatttcatcttatttgctg----tttctattctaatttttctacatctaatagaagtaaatatgttagaca 206  Q
    |||||||  ||||||||||||| |||||| |||||||||||||||||     |||| ||||| ||||||||| ||| |||||||||||||||||| ||||    
T  33416536 cttcagatgaaggctcgagtaaaggtttccatttcatcttatttgcttcatatttcaattctcatttttctatatcaaatagaagtaaatatgttggaca 33416437  T
Q  207 gatttgaatttatacatgtatttcaatttttacatgtaaaagagaaaaaatga--attatacttccatttt 275  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||  | ||||||||||||||    
T  33416436 gatttgaatttatacatgtatttcagtttttacatgtaaaagagaagaaaagatgaatatacttccatttt 33416366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 486 - 678
Target Start/End: Complemental strand, 33416345 - 33416152
Alignment:
Q  486 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctg 585  Q
    ||||||||||||||||||||||||| ||| || || || | ||||||| ||||||||||||||||| ||||||||||| | ||| | ||||||||| |||    
T  33416345 tataaaaatagcttatacataagcactttgataatgagcgcttatcttataagctttaattaggttgtttatccaaacaaggtcatggttttctagtctg 33416246  T
Q  586 ttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 678  Q
    |||||||||||||||||| |||  ||||  || ||||| |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33416245 ttcacctatctttgaatttttagttaagacttctaattgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33416152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 493 - 678
Target Start/End: Original strand, 24631975 - 24632161
Alignment:
Q  493 atagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacct 592  Q
    ||||||||| |||||||| || ||||||||| ||||||||| |||  |||||||| |||  |||||||||| | |||||||||||| | | ||||||||     
T  24631975 atagcttatgcataagcacttatatgataagcgtttatcttataatatttaattaagttgcttatccaaacgaggtcttagttttccaacttgttcacca 24632074  T
Q  593 atctttgaattcttacataaggtttgtaatttttaaatgtctattctg-tcccctttgaattgcagcaactatatcaccaacacttg 678  Q
    |||||||||||| |||||||| ||| ||||| |||||||||| ||||| |||  |||| |||||||||||| |||||||| ||||||    
T  24632075 atctttgaattcctacataagatttctaattgttaaatgtctgttctgctcctgtttggattgcagcaactttatcaccagcacttg 24632161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 452 - 634
Target Start/End: Complemental strand, 9165418 - 9165228
Alignment:
Q  452 tataggaaaacagtatgacttcatttta--tcttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattagg 549  Q
    |||||||||||||||||||||||| |||  | ||| ||||||||||||||||||||||| | || |||| ||||   ||||||| |||||||||||||||    
T  9165418 tataggaaaacagtatgacttcatcttaccttttgttataaaaatagcttatacataagtacttatatg-taagcacttatcttataagctttaattagg 9165320  T
Q  550 ttatttatccaaac-------taagtcttagttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtct 634  Q
       |||||||||||       ||  || ||| |||  |||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  9165319 gcgtttatccaaacaaggtcatagctcataggtttgcagcctgttcacctatctttgaatttttacataagatttctaattgttaaatgtct 9165228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 681 - 745
Target Start/End: Complemental strand, 33414788 - 33414724
Alignment:
Q  681 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagac 745  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  33414788 tgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctgataagaaatccggaagac 33414724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 33385837 - 33385707
Alignment:
Q  25 agtacaagttgaagatgaagaagttgcaattgcatccgaga-caaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaagg 123  Q
    |||||||||||||| ||||||||||||||||||||   | | ||||||||| | ||||||| ||||||||||||||||| |||||  | |||||  ||||    
T  33385837 agtacaagttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggacaaaccggaattacagcgtcagatgaagg 33385738  T
Q  124 ctcgagtaatggtttcaatttcatcttattt 154  Q
    || ||| || |||| ||||||||||||||||    
T  33385737 cttgagcaaaggttgcaatttcatcttattt 33385707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 681 - 745
Target Start/End: Complemental strand, 33293194 - 33293130
Alignment:
Q  681 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagac 745  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  33293194 tgaaaaggtgaaagcatacctcagaaaaaagggtctctcattcgctgataagaaatccagaagac 33293130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 335 - 441
Target Start/End: Original strand, 24631864 - 24631970
Alignment:
Q  335 atattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaa 434  Q
    |||| ||||||||||| ||| ||| |||||||| |||||||||||  |||| ||||||| ||||| |||||| |||||||||||  | | ||| ||||||    
T  24631864 atataagcacttgtgaaactatttggaagagtttatggaaacaactcatgatatgtccataaaagctgtttttagcttatttccaaaagctgtttagaaa 24631963  T
Q  435 agcttat 441  Q
    |||||||    
T  24631964 agcttat 24631970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 679 - 740
Target Start/End: Complemental strand, 33279139 - 33279079
Alignment:
Q  679 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccgg 740  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||    
T  33279139 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccgg 33279079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 681 - 745
Target Start/End: Complemental strand, 33258416 - 33258352
Alignment:
Q  681 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagac 745  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| ||||    
T  33258416 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagac 33258352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 681 - 740
Target Start/End: Complemental strand, 33395274 - 33395215
Alignment:
Q  681 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccgg 740  Q
    ||||||||| ||| ||||||| |||| ||||||||||||||| |||||||||||||||||    
T  33395274 tgaaaaggcccaatcataccttagaacaaagggtctctcatcagctgacaagaaatccgg 33395215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 449 - 523
Target Start/End: Original strand, 29274300 - 29274376
Alignment:
Q  449 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 523  Q
    ||||||| ||||||| | |||||| ||||||||||  |||||| |||||||||||||||||||| || |||||||||    
T  29274300 gcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgataag 29274376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 33281376 - 33281320
Alignment:
Q  40 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 99  Q
    |||||| ||||||||||||||||||||||||| ||   ||||||||||||||||||||||    
T  33281376 tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac 33281320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 681 - 727
Target Start/End: Original strand, 28873045 - 28873091
Alignment:
Q  681 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctg 727  Q
    |||||||||| |||||||||||||| |||||||||||||||| ||||    
T  28873045 tgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 33416592 - 33416538
Alignment:
Q  28 acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatct 82  Q
    |||||||||||||||||  |||||||||||||| || ||||||| ||||||||||    
T  33416592 acaagttgaagatgaagcggttgcaattgcatctgaaacaaacagcaacttatct 33416538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 33302003 - 33301947
Alignment:
Q  40 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 99  Q
    |||||| ||||| ||||||||||||||||||| ||   ||||||||||||||||||||||    
T  33302003 tgaagaggttgctattgcatccgagacaaacatca---tatctaattctaatggacaaac 33301947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 343 - 418
Target Start/End: Original strand, 281808 - 281881
Alignment:
Q  343 acttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 418  Q
    |||||||||||||||| | |||| |||||||| ||||  ||||||||||   | ||||||||||||||||||||||    
T  281808 acttgtgagactgtttgggagagctaatggaagcaacttatgacatgtc--tataagttgttttcagcttatttcc 281881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 633
Target Start/End: Complemental strand, 33282282 - 33282241
Alignment:
Q  592 tatctttgaattcttacataaggtttgtaatttttaaatgtc 633  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33282282 tatcgttgaattcttacataagatttctaatttttaaatgtc 33282241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 633
Target Start/End: Complemental strand, 33398083 - 33398042
Alignment:
Q  592 tatctttgaattcttacataaggtttgtaatttttaaatgtc 633  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33398083 tatcgttgaattcttacataagatttataatttttaaatgtc 33398042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 633
Target Start/End: Complemental strand, 33408993 - 33408952
Alignment:
Q  592 tatctttgaattcttacataaggtttgtaatttttaaatgtc 633  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33408993 tatcgttgaattcttacataagatttataatttttaaatgtc 33408952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 4e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 120 - 274
Target Start/End: Original strand, 30653203 - 30653360
Alignment:
Q  120 aaggctcgagtaatggtttcaatttcatcttatttgc----tgtttctattctaatttttctacatctaatagaagtaaatatgttagacagatttgaat 215  Q
    ||||||||||||| ||||  |||||||||||||||||    |||||||||||||||||||| |||||||| | |||||| |||||||||||||||||||     
T  30653203 aaggctcgagtaaaggttaaaatttcatcttatttgcgtcatgtttctattctaatttttcaacatctaaca-aagtaattatgttagacagatttgaac 30653301  T
Q  216 ttatacatgtatttcaatttttacatgtaaaagagaaaaaatgaattatacttccattt 274  Q
    |||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||||    
T  30653302 ttatacatgtctttcggtttttacatgtaaaagagaaaaaataaattatacttccattt 30653360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 401 - 523
Target Start/End: Complemental strand, 11684468 - 11684346
Alignment:
Q  401 tgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagctta 500  Q
    |||||||| |||||||||||| | | || || | ||||||||||||| ||||||| ||||||||| | |||   || ||| ||| |||||||||||||||    
T  11684468 tgttttcaacttatttccgtaagctctccagcatagcttatgaaaatagcttatatgaaaacagtttcactattttatattttgttataaaaatagctta 11684369  T
Q  501 tacataagcaattttatgataag 523  Q
    ||||| |||| || |||||||||    
T  11684368 tacattagcacttatatgataag 11684346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 447
Target Start/End: Original strand, 30653373 - 30653438
Alignment:
Q  382 atgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaat 447  Q
    ||||||||| || ||||| |||||||||||||||||| || | |||||||||||||||||||||||    
T  30653373 atgacatgttcataaaagctgttttcagcttatttccataagctgtctagaaaagcttatgaaaat 30653438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 449 - 530
Target Start/End: Original strand, 32059660 - 32059742
Alignment:
Q  449 gcttataggaaaacagtatgacttcattttatctt-gctataaaaatagcttatacataagcaattttatgataagtgtttat 530  Q
    ||||||| ||||||||| |||||| |||||||||| | || ||||| |||||||||||||||| || |||||||||| |||||    
T  32059660 gcttatatgaaaacagtttgactttattttatcttagttacaaaaacagcttatacataagcacttatatgataagtatttat 32059742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 530
Target Start/End: Complemental strand, 10391313 - 10391269
Alignment:
Q  486 tataaaaatagcttatacataagcaattttatgataagtgtttat 530  Q
    |||||||||||||||||| |||||| || ||||||||||||||||    
T  10391313 tataaaaatagcttatacgtaagcacttatatgataagtgtttat 10391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 11457209 - 11457158
Alignment:
Q  342 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtcca 393  Q
    ||||||||||||||||| |||||| | |||||||||||  ||||||||||||    
T  11457209 cacttgtgagactgttttgaagagcttatggaaacaacttatgacatgtcca 11457158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 530
Target Start/End: Original strand, 29115328 - 29115367
Alignment:
Q  491 aaatagcttatacataagcaattttatgataagtgtttat 530  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  29115328 aaatagcttatacataagcacttttatgataaatgtttat 29115367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 85; Significance: 4e-40; HSPs: 6)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 312 - 548
Target Start/End: Complemental strand, 4047 - 3802
Alignment:
Q  312 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 411  Q
    |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||| ||||||||  |  |||||||||||| ||||| ||||||||||     
T  4047 gatgtatttgaacttatatattgatataagcacttgtgagactgtttggaagagtttatggaaacggctcatgacatgtccataaaagctgttttcagcc 3948  T
Q  412 tatttccgtatgttgtctagaaaagcttatgaaaatcgct-------tataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttata 502  Q
      ||| | |||  ||||||||||||||||||||||| |||       ||||||||||||||||||||||| ||||||  ||| ||||||||||||||| |    
T  3947 attttacatatactgtctagaaaagcttatgaaaatagcttatagcatataggaaaacagtatgacttcagtttatcttttgttataaaaatagcttaca 3848  T
Q  503 cataagcaattttatgataagtgtttatcttgtaagctttaattag 548  Q
    |||||||| || ||||  ||| | ||||||| ||||||| ||||||    
T  3847 cataagcacttatatgtaaagcgcttatcttataagcttgaattag 3802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 592 - 678
Target Start/End: Complemental strand, 3791 - 3704
Alignment:
Q  592 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 678  Q
    |||||||||||||||||||||| ||| || || |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  3791 tatctttgaattcttacataagatttatagttgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 3704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 679 - 740
Target Start/End: Original strand, 15114 - 15174
Alignment:
Q  679 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccgg 740  Q
    ||||||||||||||||||||||| || ||||||||||||| ||| |||||||||||||||||    
T  15114 catgaaaaggcgcaagcataccttag-aaaaagggtctcttatcagctgacaagaaatccgg 15174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 681 - 745
Target Start/End: Complemental strand, 2537 - 2473
Alignment:
Q  681 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagac 745  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| ||||    
T  2537 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagac 2473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 12876 - 12932
Alignment:
Q  40 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 99  Q
    |||||| ||||||||||||||||||||||||| ||   ||||||||||||||||||||||    
T  12876 tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac 12932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 633
Target Start/End: Original strand, 11970 - 12011
Alignment:
Q  592 tatctttgaattcttacataaggtttgtaatttttaaatgtc 633  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  11970 tatcgttgaattcttacataagatttctaatttttaaatgtc 12011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 681 - 745
Target Start/End: Original strand, 17447760 - 17447825
Alignment:
Q  681 tgaaaaggcgcaagcatacctcagaaaaaa-gggtctctcatccgctgacaagaaatccggaagac 745  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  17447760 tgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatccgctgataagaaatccggaagac 17447825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 17443374 - 17443503
Alignment:
Q  28 acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaaggctcg 127  Q
    ||||||||||  ||||||||||||||||||||  || ||||||||   | ||||||| ||||||||||||||| |||||||  |||||||  |||||| |    
T  17443374 acaagttgaacgtgaagaagttgcaattgcatttgaaacaaacaatggcgtatctaactctaatggacaaaccagcattacagcttcagatgaaggcttg 17443473  T
Q  128 agtaatggtttcaatttcatcttatttgct 157  Q
    |  || |||| |||||||||||||||||||    
T  17443474 accaaaggttgcaatttcatcttatttgct 17443503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 17443537 - 17443602
Alignment:
Q  312 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaaca 377  Q
    |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||| |||||||||    
T  17443537 gatgtatttgaacttatatactgatataagcacttgtgagactgtttggaagagtttatggaaaca 17443602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 449 - 530
Target Start/End: Complemental strand, 34339122 - 34339039
Alignment:
Q  449 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 530  Q
    ||||||| ||||||||| |||||| ||||||||||  |||||| ||| || ||||||||||||| || ||||||||||||||||    
T  34339122 gcttatacgaaaacagtctgactttattttatctttagctatagaaaaagtttatacataagcacttatatgataagtgtttat 34339039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 3102657 - 3102617
Alignment:
Q  482 ttgctataaaaatagcttatacataagcaattttatgataa 522  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  3102657 ttgctataaaaatagcttatacataagcagttatatgataa 3102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 14299588 - 14299663
Alignment:
Q  340 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttc 417  Q
    |||||||| | |||||||| |||||||| |||||||||||  ||||||| |||| | |  ||||||||||||||||||    
T  14299588 agcacttgagggactgtttggaagagtttatggaaacaacttatgacatatccataca--ttgttttcagcttatttc 14299663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 510
Target Start/End: Original strand, 7103554 - 7103615
Alignment:
Q  449 gcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagca 510  Q
    |||||||  |||||||| |||||| ||||||||||| |||||| |||| || ||||||||||    
T  7103554 gcttatattaaaacagtttgactttattttatcttgttataaatatagtttctacataagca 7103615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 13000381 - 13000457
Alignment:
Q  340 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 418  Q
    ||||||||||||||| |||  ||||||| |||| ||||||  |||||||||||||  ||||||||||||||||||||||    
T  13000381 agcacttgtgagactatttgcaagagtttatggtaacaacttatgacatgtccac--aagttgttttcagcttatttcc 13000457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 457 - 525
Target Start/End: Complemental strand, 26717246 - 26717178
Alignment:
Q  457 gaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtg 525  Q
    ||||| ||| |||||| ||||||||||| ||||||| |||||||| || ||||| || |||||||||||    
T  26717246 gaaaatagtttgactttattttatcttgttataaaattagcttattcagaagcacttatatgataagtg 26717178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 521
Target Start/End: Complemental strand, 5290649 - 5290566
Alignment:
Q  435 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 521  Q
    |||||||||| || ||||| | ||||||||| |||||  ||||||| ||| |||| |||||||||||||||||||| || |||||||    
T  5290649 agcttatgaatatagcttacatgaaaacagtttgact--attttat-ttgttatagaaatagcttatacataagcacttgtatgata 5290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 530
Target Start/End: Original strand, 26716527 - 26716590
Alignment:
Q  467 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtgtttat 530  Q
    |||||| |||| |||||| |||| || ||||||||||||||||| || ||| ||||||||||||    
T  26716527 tgactttatttaatcttgttatagaagtagcttatacataagcacttatataataagtgtttat 26716590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 30191098 - 30191174
Alignment:
Q  340 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 418  Q
    ||||||||| ||||||||| | |||| | |||||||||||  |||||||||   ||||| |||||||||||||||||||    
T  30191098 agcacttgttagactgtttgggagagcttatggaaacaacttatgacatgt--tcaaaacttgttttcagcttatttcc 30191174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 397 - 483
Target Start/End: Original strand, 10079082 - 10079168
Alignment:
Q  397 aagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatctt 483  Q
    |||||||||| ||||| ||||| ||   | || |||| |||| |||||||  ||||||| ||||||||| |||||||||||||||||    
T  10079082 aagttgttttaagcttctttccataaactttccagaatagctcatgaaaacagcttatacgaaaacagtttgacttcattttatctt 10079168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 446
Target Start/End: Complemental strand, 30389157 - 30389108
Alignment:
Q  397 aagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaa 446  Q
    |||||||||||||||||||| | || ||| ||||| ||||||||||||||    
T  30389157 aagttgttttcagcttattttcataagttctctaggaaagcttatgaaaa 30389108  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 523
Target Start/End: Original strand, 34788498 - 34788574
Alignment:
Q  449 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 523  Q
    ||||||| | ||||||| |||||| ||||||||||  |  ||||||||||||||||| |||||| || |||||||||    
T  34788498 gcttatatggaaacagtttgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataag 34788574  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 342 - 418
Target Start/End: Complemental strand, 43115167 - 43115093
Alignment:
Q  342 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 418  Q
    ||||||||||| ||||| |||||||| |||||||||||  ||||||||||  || || |||||||||||||||||||    
T  43115167 cacttgtgagattgtttggaagagtttatggaaacaacttatgacatgtc--cataacttgttttcagcttatttcc 43115093  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 452 - 530
Target Start/End: Complemental strand, 38462277 - 38462197
Alignment:
Q  452 tataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 530  Q
    |||| ||||||||| |||||| ||||||||||  | |||| |||||||||||| |||| || || ||||||||||||||||    
T  38462277 tatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtgtttat 38462197  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 450 - 523
Target Start/End: Complemental strand, 22232824 - 22232749
Alignment:
Q  450 cttataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagcaattttatgataag 523  Q
    |||||| ||||||||| |||||| ||||||||  ||| |||| ||||||||||||||| |||| || |||||||||    
T  22232824 cttatatgaaaacagtttgactttattttatcatttgttatataaatagcttatacatgagcatttatatgataag 22232749  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 539
Target Start/End: Original strand, 3015928 - 3016011
Alignment:
Q  457 gaaaacagtatgacttcattttatc-ttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc 539  Q
    ||||||||| ||||||||||||||| ||| |||| |||||  | ||||||||||| || ||| |||||||||||| || |||||    
T  3015928 gaaaacagtttgacttcattttatctttgttatagaaataattaatacataagcacttatataataagtgtttatgttataagc 3016011  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 37273247 - 37273171
Alignment:
Q  340 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 418  Q
    |||||| |||||||||||| | |||| | |||||||||||  ||||||||||  || |||||||||||| |||||||||    
T  37273247 agcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtc--cataagttgttttcaacttatttcc 37273171  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 415
Target Start/End: Complemental strand, 24624344 - 24624250
Alignment:
Q  319 ttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatt 415  Q
    ||||||||||  | ||| |||||||||||| ||||||||| |||||| | ||| ||||| |  |||||||||||| |||   |||||||||||||||    
T  24624344 ttgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataaa--ctgttttcagcttatt 24624250  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 455
Target Start/End: Complemental strand, 3468725 - 3468614
Alignment:
Q  342 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttat 441  Q
    ||||| ||||||||||||| ||||||  |||||||||| |||||||||||  || ||||||||| || |||||||||  | ||| ||||| | || ||||    
T  3468725 cacttttgagactgtttcggagagttgttggaaacaactaatgacatgtc--cataagttgtttccaacttatttccacaagttctctaggatagattat 3468628  T
Q  442 gaaaatcgcttata 455  Q
    |||||  |||||||    
T  3468627 gaaaaaagcttata 3468614  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 449 - 530
Target Start/End: Original strand, 3610811 - 3610894
Alignment:
Q  449 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 530  Q
    |||||||  |||||||| || ||||||||||||||  | | || |||||||||||||||||||| || ||||| ||||||||||    
T  3610811 gcttataccaaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagcacttatatgacaagtgtttat 3610894  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 401 - 522
Target Start/End: Original strand, 26935573 - 26935696
Alignment:
Q  401 tgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatc--ttgctataaaaatagct 498  Q
    |||||||||||||||||| || | | | ||||| || |||||||||| ||| ||| ||||||| | | || | ||||||||  ||| |||||||||||||    
T  26935573 tgttttcagcttatttccataagctctttagaatagattatgaaaatagctcatatgaaaacaatttaaccttattttatcatttgttataaaaatagct 26935672  T
Q  499 tatacataagcaattttatgataa 522  Q
    || ||| ||||| || ||||||||    
T  26935673 tacacaaaagcacttatatgataa 26935696  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 486 - 564
Target Start/End: Original strand, 22388014 - 22388093
Alignment:
Q  486 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc-tttaattaggttatttatccaaact 564  Q
    |||| ||||||||||| |||||||| ||  ||||||||||||||| || |||||  ||||||| ||| ||||||||||||    
T  22388014 tatagaaatagcttatccataagcacttaaatgataagtgtttatgttataagcgcttaattaagttgtttatccaaact 22388093  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 467 - 520
Target Start/End: Complemental strand, 44207750 - 44207697
Alignment:
Q  467 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgat 520  Q
    |||||| ||||||||||||||||||||||||||| | ||||||| || ||||||    
T  44207750 tgactttattttatcttgctataaaaatagcttacatataagcacttgtatgat 44207697  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 15581367 - 15581316
Alignment:
Q  340 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtc 391  Q
    ||||||||||||| ||||| |||||| |||||||||||||  ||||||||||    
T  15581367 agcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtc 15581316  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 508
Target Start/End: Original strand, 21335 - 21410
Alignment:
Q  435 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttg--ctataaaaatagcttatacataag 508  Q
    ||||||||||||  ||||||| ||||||| | | |||| ||||||||||   ||||||||||||||||||||||||    
T  21335 agcttatgaaaacagcttatacgaaaacaatttaactttattttatcttttcctataaaaatagcttatacataag 21410  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 467 - 521
Target Start/End: Original strand, 32920489 - 32920543
Alignment:
Q  467 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 521  Q
    |||||| ||||||||||| |||||||||||||||| ||||| || || |||||||    
T  32920489 tgactttattttatcttgttataaaaatagcttatccataaacacttatatgata 32920543  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 457 - 524
Target Start/End: Complemental strand, 47970309 - 47970240
Alignment:
Q  457 gaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagt 524  Q
    ||||| ||| |||||||||||||||||  | |||| |||||||||||||||||||| || ||||| ||||    
T  47970309 gaaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatgacaagt 47970240  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 507
Target Start/End: Original strand, 55437345 - 55437415
Alignment:
Q  437 cttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataa 507  Q
    ||||||||||| ||||||| ||||| | | |||||| ||||||| ||| |||| |||||||||||| ||||    
T  55437345 cttatgaaaatagcttatatgaaaataatttgactttattttatattgttatagaaatagcttatagataa 55437415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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