View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16656_low_11 (Length: 315)

Name: NF16656_low_11
Description: NF16656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16656_low_11
NF16656_low_11
[»] chr3 (1 HSPs)
chr3 (10-298)||(49698385-49698673)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 298
Target Start/End: Complemental strand, 49698673 - 49698385
Alignment:
Q  10 catcatcatcgttgtggctttcatacatcatttttgcacaccgtagagattagtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49698673 catcatcatcgttgtggctttcatacatcatttttgcacaccgtagagattagtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctac 49698574  T
Q  110 ggtttttatgaagctagctaactttgttcaatcattatatgattaatcaccatgcaacactagcttctttattaattctctggagatggaatttgtgtgg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49698573 ggtttttatgaagctagctaactttgttcaatcattatatgattaatcaccatgcaacaccagcttctttattaattctctggagatggaatttgtgtgg 49698474  T
Q  210 tattgtatggtgttaattgcttcttctccttgacattaatcaatgaagctccacaaagttaatcgttgagtgatttgtaatgatggttt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  49698473 tattgtatggtgttaattgcttcttctccttgacattaatcaatgaagttccacaaaattaatcgttgagtgatttgtaatgatggttt 49698385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University