View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16656_low_12 (Length: 302)
Name: NF16656_low_12
Description: NF16656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16656_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 7012054 - 7011762
Alignment:
| Q |
1 |
attttttcctcatacaacacaacttcaaaatgaatgaaatgtaaaatacacttctgcttggtcgcacttttggttccgtattttatcactcacgaaaata |
100 |
Q |
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| T |
7012054 |
attttttcctcatacaacacaacttcaaaatgaatgaaatgtaaaatacacttctgcttggtcgcacttttggttccgtattttatcactcacgaaaata |
7011955 |
T |
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| Q |
101 |
gtccannnnnnnaaatttgaactttttggtcttcaagtatcacaattgatgcaagttttggagatttttggtcccaaaagtggtgatgtgacaaattttt |
200 |
Q |
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| T |
7011954 |
gtccatttttt-aaatttgaactttttggtcttcaattatcacaattgatgcaagttttggagatttttggtcccaaaagtggtgatgtgacaaattttt |
7011856 |
T |
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| Q |
201 |
tggtccttcaaaaatgtattta------tctgtttgaatgtttttgaagcactctctttgtccctga---ttcttcttcgtataaggttctcat |
285 |
Q |
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| T |
7011855 |
tggtccttcaagaatgtatttatccgtttctgtttgaatgtttttgaagcactctctttgtccctgattcttcttcttcgtataaggttctcat |
7011762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 7023929 - 7023817
Alignment:
| Q |
33 |
aatgaaatgtaaaatacacttctgcttggtc---gcacttttggttccgtattttatcactcacgaaaatagtccannnnnnnaaatttgaactttttgg |
129 |
Q |
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| T |
7023929 |
aatgaaatgcaaaatacactttggcttggtcatcgcacttttggttccgtattttatcattcacgaaaatagttca-ttttttaaattcgaactttttgg |
7023831 |
T |
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| Q |
130 |
tcttcaagtatcac |
143 |
Q |
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| T |
7023830 |
tcttcaagtatcac |
7023817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 7023758 - 7023700
Alignment:
| Q |
166 |
ttttggtcccaaaagtggtgatgtgacaaattttttggtccttcaaaaatgtatttatc |
224 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
7023758 |
tttttgtcccaaaagtggtgatgtgacaatttttttggtccttcaaaaatgcatttatc |
7023700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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