View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16656_low_15 (Length: 258)
Name: NF16656_low_15
Description: NF16656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16656_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 41304901 - 41304649
Alignment:
| Q |
1 |
cgaataatcttctcttcaagattctgcttgatgaaatgccgatctatctccacatatttcgttcgatcatgctggataggattttgtgagatatcaattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41304901 |
cgaataatcttctcttcaagattctgcttgatgaaatgccgatctatctccatatgtttcgttcgatcatgctggataggattttgtgagatatcaattg |
41304802 |
T |
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| Q |
101 |
ctgctttgttttcacaaaacaagttcgtctcagtgctaggaccaaagccaatctctatgagtaaccttctgagccatagtagttcacaaagtccttttgc |
200 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41304801 |
ctgctttgttgtcacaaaacaagttcatctcagtgctaggaccaaagccaatctctatgagtaaccttctgagccatagtagttcacaaagtccttttgc |
41304702 |
T |
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| Q |
201 |
catgcccctgaactcagcttcagtgctagacaacgccactaccctttgcttct |
253 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
41304701 |
catgcccctgaactcagcttcagcgctagacaacgccactaccttttgcttct |
41304649 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 253
Target Start/End: Original strand, 522802 - 522889
Alignment:
| Q |
166 |
cttctgagccatagtagttcacaaagtccttttgccatgcccctgaactcagcttcagtgctagacaacgccactaccctttgcttct |
253 |
Q |
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||||| ||||| |||||||||||||| || || | ||| || |||||||||||||||| || || || ||||||||| ||||||||| |
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| T |
522802 |
cttctaagccaaagtagttcacaaagacccttagacattcctctgaactcagcttcagcacttgataatgccactaccttttgcttct |
522889 |
T |
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