View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16656_low_16 (Length: 255)
Name: NF16656_low_16
Description: NF16656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16656_low_16 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 39 - 255
Target Start/End: Original strand, 10076094 - 10076310
Alignment:
| Q |
39 |
gatgacttacttgaacaaagcagtcatgaaaatgaagacgaagcaaggatgcacccaaacgaggatctttcaatacagcagttgttattgctgttctaac |
138 |
Q |
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| T |
10076094 |
gatgacttacttgaacaaagcagtcttgaaaatgaagacgaagcaaagatgcacccaaacgaggatctttcaatacagcagttgttattgctgtcctaat |
10076193 |
T |
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| Q |
139 |
ggtttgaacagcaagaggacacccatgcaacaaataaaaagagggtctcaactcactagaaggaccagggatcaaattagacacataagtagatgctgaa |
238 |
Q |
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| T |
10076194 |
ggtttgaacagcaagaggacacccatgcaacaaataaaaagagggtctcaactcactagaaggaccagggatcaaattagacacataagtagttgctgaa |
10076293 |
T |
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| Q |
239 |
ggagttacacttgaagc |
255 |
Q |
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| T |
10076294 |
ggaattacacttgaagc |
10076310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 10084345 - 10084421
Alignment:
| Q |
43 |
acttacttgaacaaagcagtcatgaaaatgaagacgaagcaaggatgcacccaaacgaggatctttcaatacagcag |
119 |
Q |
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| T |
10084345 |
acttacttgaacaaagcaatcatggaaatgaagacggagcaaggatgcacctaagcgacgatctctcgacacagcag |
10084421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 52344479 - 52344529
Alignment:
| Q |
45 |
ttacttgaacaaagcagtcatgaaaatgaagacgaagcaaggatgcaccca |
95 |
Q |
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| T |
52344479 |
ttacttgcacaaagcagtcatggaaatggagacgaagcaaggatgctccca |
52344529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 9156102 - 9156147
Alignment:
| Q |
45 |
ttacttgaacaaagcagtcatgaaaatgaagacgaagcaaggatgc |
90 |
Q |
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| T |
9156102 |
ttacttgaacaaagcagtcctgaaaatggagtcgaagcaaggatgc |
9156147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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