View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16656_low_17 (Length: 253)

Name: NF16656_low_17
Description: NF16656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16656_low_17
NF16656_low_17
[»] chr4 (1 HSPs)
chr4 (15-245)||(30776132-30776362)
[»] chr2 (7 HSPs)
chr2 (59-245)||(16660967-16661153)
chr2 (157-220)||(12000373-12000436)
chr2 (96-218)||(43626362-43626484)
chr2 (84-232)||(12244329-12244477)
chr2 (99-217)||(7543320-7543438)
chr2 (83-145)||(16656525-16656587)
chr2 (195-233)||(16656637-16656675)
[»] chr7 (11 HSPs)
chr7 (96-235)||(3148396-3148535)
chr7 (91-235)||(8584469-8584613)
chr7 (87-235)||(8630253-8630401)
chr7 (84-233)||(8647728-8647877)
chr7 (69-233)||(7876745-7876909)
chr7 (84-233)||(1302338-1302487)
chr7 (99-233)||(8660271-8660405)
chr7 (96-233)||(6790437-6790574)
chr7 (99-233)||(8655376-8655510)
chr7 (96-233)||(10492939-10493076)
chr7 (84-216)||(13332076-13332208)
[»] chr5 (2 HSPs)
chr5 (78-214)||(42554107-42554243)
chr5 (96-233)||(28220974-28221111)
[»] chr1 (3 HSPs)
chr1 (83-233)||(4677465-4677615)
chr1 (99-233)||(15596086-15596220)
chr1 (56-130)||(34465148-34465220)
[»] chr8 (1 HSPs)
chr8 (96-221)||(43745863-43745985)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 30776362 - 30776132
Alignment:
Q  15 gagttcctcctgagtgtgtgaggtgaaaacagaacttgacctttgaaagatcgcatggcgaacaaatgtgaaggacatgccgtgggaatagaccttggaa 114  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30776362 gagttcctcctgagtgtgtgaggtgaaaacagagcttgacctttgaaagatcgcatggcgaacaaatgtgaaggacatgccgtggggatagaccttggaa 30776263  T
Q  115 caacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgcttt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30776262 caacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgcttt 30776163  T
Q  215 cactgatggtcaaaggttggtctgtgctgct 245  Q
    |||||||||||||||||||||| ||||||||    
T  30776162 cactgatggtcaaaggttggtcggtgctgct 30776132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 59 - 245
Target Start/End: Original strand, 16660967 - 16661153
Alignment:
Q  59 gaaagatcgcatggcgaacaaatgtgaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacaga 158  Q
    |||||||| ||||||||  |||   ||||| ||||  ||||| |||||||| |||||||| ||||| ||||| ||||||||| |||| ||||||||||||    
T  16660967 gaaagatcacatggcgagaaaacacgaagggcatgttgtgggcatagacctaggaacaacatactcatgtgttgctgtttggttggaagagaaaaacaga 16661066  T
Q  159 gttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtctgtgctgct 245  Q
    ||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| ||||||||||||| ||| ||||    
T  16661067 gttgagattatccacaacgatgaaggcaacaaaattacaccttcttttgttgcttttactgatgctcaaaggttggtcggtggtgct 16661153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 12000436 - 12000373
Alignment:
Q  157 gagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactga 220  Q
    |||||||||| || ||||||||| |||||| |||||| |||||||||| |||||||||||||||    
T  12000436 gagttgaaatcattcacaacgatcaaggcaacaaaataacaccttcttgtgttgctttcactga 12000373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 43626484 - 43626362
Alignment:
Q  96 gtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatca 195  Q
    |||||||||||||||||||||||||| || ||| | ||||| ||||| || || || |  ||||| || ||||||||||| ||  |||| | || ||  |    
T  43626484 gtgggaatagaccttggaacaacgtattcttgtattgctgtgtggcttgatgaaaacagaagagtagagattatccacaatgaccaaggaaacagaacta 43626385  T
Q  196 caccttcttttgttgctttcact 218  Q
    |||||||||||||| ||||||||    
T  43626384 caccttcttttgtttctttcact 43626362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 232
Target Start/End: Original strand, 12244329 - 12244477
Alignment:
Q  84 gaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaag 183  Q
    ||||||| ||||||||||||||||||||| |||||||| || ||||| || || |||| |||  |  |     | |||||||| || ||||||||| | |    
T  12244329 gaaggacgtgccgtgggaatagaccttggtacaacgtattcatgtgttgcagtatggcaggaacaacactctcgtgttgaaatcattcacaacgatcagg 12244428  T
Q  184 gcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggtt 232  Q
    ||| || ||  |||||||||| ||||||||||||||| | |||||||||    
T  12244429 gcaacagaacaacaccttcttgtgttgctttcactgaagatcaaaggtt 12244477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 7543438 - 7543320
Alignment:
Q  99 ggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatcacac 198  Q
    |||||||||||||| ||||||||||| ||||| || || |||| |||  |  |  |  |||||||||| || ||||||||  |||||| || ||  ||||    
T  7543438 ggaatagaccttggcacaacgtactcttgtgttgcagtatggcaggatcaacactatcgagttgaaatcattcacaacgaccaaggcaacagaacaacac 7543339  T
Q  199 cttcttttgttgctttcac 217  Q
    |||||||||||||||||||    
T  7543338 cttcttttgttgctttcac 7543320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 16656525 - 16656587
Alignment:
Q  83 tgaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctgga 145  Q
    |||||||| ||| ||||||||||||||||||||||| || || ||||| ||||| ||| ||||    
T  16656525 tgaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttgctgtgtggatgga 16656587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 16656637 - 16656675
Alignment:
Q  195 acaccttcttttgttgctttcactgatggtcaaaggttg 233  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  16656637 acaccttcttttgttgctttcactcatgatcaaaggttg 16656675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 96 - 235
Target Start/End: Complemental strand, 3148535 - 3148396
Alignment:
Q  96 gtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatca 195  Q
    |||||||| ||||||||||||||||| ||||| || ||||||||||| || ||| | ||||||||||| ||||| ||||| ||  |||||| ||||| ||    
T  3148535 gtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggctcgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaacca 3148436  T
Q  196 caccttcttttgttgctttcactgatggtcaaaggttggt 235  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  3148435 caccttcttttgttgctttcactgatgatcaaaggttggt 3148396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 235
Target Start/End: Original strand, 8584469 - 8584613
Alignment:
Q  91 atgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaa 190  Q
    |||| ||||||||||||||||||||||| || || ||||| | ||||||| |||| || || ||||||||||| ||||| ||||||||||||||||  ||    
T  8584469 atgctgtgggaatagaccttggaacaacctattcttgtgttggtgtttggttggaagaaaagaacagagttgagattattcacaacgatgaaggcaataa 8584568  T
Q  191 aatcacaccttcttttgttgctttcactgatggtcaaaggttggt 235  Q
    |||||||||||| ||||||||||| || |||| ||||||||||||    
T  8584569 aatcacaccttcctttgttgcttttaccgatgatcaaaggttggt 8584613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 87 - 235
Target Start/End: Complemental strand, 8630401 - 8630253
Alignment:
Q  87 ggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggca 186  Q
    |||||||| ||||||||||||||||||||||| || || ||||| | ||||||| |||| || || ||||||||||| ||||| ||||| ||||||||||    
T  8630401 ggacatgctgtgggaatagaccttggaacaacctattcttgtgttggtgtttggttggaagaaaagaacagagttgagattattcacaatgatgaaggca 8630302  T
Q  187 gcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggt 235  Q
      |||||||||||||| || |||||||| || |||| ||||||||||||    
T  8630301 ataaaatcacaccttccttcgttgcttttaccgatgatcaaaggttggt 8630253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 8647877 - 8647728
Alignment:
Q  84 gaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaag 183  Q
    ||||||| ||| |||||||||||||||||||||||||| |||||||| ||||| ||||| || ||  | || |||||||| ||||| ||||| ||| |||    
T  8647877 gaaggacttgcagtgggaatagaccttggaacaacgtattcgtgtgttgctgtgtggcttgatgaacacaatagagttgagattattcacaatgatcaag 8647778  T
Q  184 gcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttg 233  Q
    | | || ||  ||||||||||||||||||||||| |||| ||||||||||    
T  8647777 gaaacagaactacaccttcttttgttgctttcaccgatgatcaaaggttg 8647728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 7876745 - 7876909
Alignment:
Q  69 atggcgaacaaatgtgaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaatta 168  Q
    |||||||| ||||  ||||||| ||| |||||||||||||||||||||||||| || ||||| ||||| ||||| || ||  | || ||||| |||||||    
T  7876745 atggcgaaaaaatacgaaggacgtgcggtgggaatagaccttggaacaacgtattcctgtgttgctgtgtggcttgatgaacacaatagagtcgaaatta 7876844  T
Q  169 tccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttg 233  Q
    | ||||| ||  |||||| || ||  |||||||||||||||||||||||  ||| ||||||||||    
T  7876845 ttcacaatgaacaaggcaacagaacaacaccttcttttgttgctttcacgaatgatcaaaggttg 7876909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 1302487 - 1302338
Alignment:
Q  84 gaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaag 183  Q
    ||||||| ||| || ||||||||||||||||| || || |||||||| ||||| ||||||||| |  | || ||||| || || ||| |||||||  |||    
T  1302487 gaaggacgtgctgttggaatagaccttggaactacttattcgtgtgttgctgtgtggctggagaatcacaatagagtagagatcatctacaacgaccaag 1302388  T
Q  184 gcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttg 233  Q
    ||| |||||  ||||| ||||||||||||||||| |||| ||||||||||    
T  1302387 gcaacaaaacaacaccgtcttttgttgctttcaccgatgatcaaaggttg 1302338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 233
Target Start/End: Complemental strand, 8660405 - 8660271
Alignment:
Q  99 ggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatcacac 198  Q
    |||||||||||||||||||| || |||||||| ||||| ||||||||| |  | ||  |||| || || ||| |||||||  |||| | |||||  ||||    
T  8660405 ggaatagaccttggaacaacctattcgtgtgttgctgtgtggctggagaatcacaatcgagtcgagatcatctacaacgaccaaggaaacaaaacaacac 8660306  T
Q  199 cttcttttgttgctttcactgatggtcaaaggttg 233  Q
    |||| ||||||||||||||||| | ||||||||||    
T  8660305 cttcatttgttgctttcactgacgatcaaaggttg 8660271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 233
Target Start/End: Complemental strand, 6790574 - 6790437
Alignment:
Q  96 gtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatca 195  Q
    |||||||||||||| |||||||| || || ||||| | ||| ||||| || ||  | || |||||||| ||||| ||||| ||  |||| | ||||| ||    
T  6790574 gtgggaatagacctgggaacaacatattcttgtgttggtgtgtggcttgatgaacacaatagagttgagattattcacaatgaccaaggtaacaaaacca 6790475  T
Q  196 caccttcttttgttgctttcactgatggtcaaaggttg 233  Q
    |||||||||||||||||||||| ||||  |||||||||    
T  6790474 caccttcttttgttgctttcaccgatgaccaaaggttg 6790437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 233
Target Start/End: Complemental strand, 8655510 - 8655376
Alignment:
Q  99 ggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatcacac 198  Q
    ||||||||||| |||||||| || || ||||| ||||| ||||| || ||  | || |||||||| ||||| ||||| ||| ||||||  | ||  ||||    
T  8655510 ggaatagacctcggaacaacctattcatgtgttgctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacac 8655411  T
Q  199 cttcttttgttgctttcactgatggtcaaaggttg 233  Q
    ||||| |||||||||||||||||  ||||||||||    
T  8655410 cttctgttgttgctttcactgattatcaaaggttg 8655376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 10492939 - 10493076
Alignment:
Q  96 gtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatca 195  Q
    ||||||||||| ||||||||||| ||||| ||||| ||||| ||||| || ||  |  | |||||||||||||| ||||| ||| |||| |  | ||  |    
T  10492939 gtgggaatagatcttggaacaacctactcatgtgttgctgtatggcttgatgaacaccaaagagttgaaattattcacaatgatcaaggaaatagaacta 10493038  T
Q  196 caccttcttttgttgctttcactgatggtcaaaggttg 233  Q
    |||||||||||||||||||||   ||| ||||||||||    
T  10493039 caccttcttttgttgctttcaacaatgatcaaaggttg 10493076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 13332076 - 13332208
Alignment:
Q  84 gaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaag 183  Q
    ||||||| ||| |||||||| |||||||||||||| ||||| ||||| ||||| ||||| || ||  |  | |||||||| ||||| ||||| ||| |||    
T  13332076 gaaggacgtgcagtgggaatcgaccttggaacaacctactcatgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaag 13332175  T
Q  184 gcagcaaaatcacaccttcttttgttgctttca 216  Q
    | |  | ||  ||||||||||||||||||||||    
T  13332176 gaaatagaactacaccttcttttgttgctttca 13332208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 42554107 - 42554243
Alignment:
Q  78 aaatgtgaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacg 177  Q
    |||| |||||||| ||| |||||||||||||||||||||||||| ||||||||  |||| |||   || ||  |||| |||||||| ||||| ||||| |    
T  42554107 aaatatgaaggacgtgcagtgggaatagaccttggaacaacgtattcgtgtgttactgtgtgggaagatgaacaaaatagagttgagattattcacaatg 42554206  T
Q  178 atgaaggcagcaaaatcacaccttcttttgttgcttt 214  Q
    || |||||| |||||  ||||||||||||||||||||    
T  42554207 atcaaggcaacaaaacaacaccttcttttgttgcttt 42554243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 233
Target Start/End: Complemental strand, 28221111 - 28220974
Alignment:
Q  96 gtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatca 195  Q
    ||||||||||| |||||||||||||| || ||||| ||||| ||||  || ||  | || || ||||| ||||| ||||| ||| |||||| |||||  |    
T  28221111 gtgggaatagatcttggaacaacgtattcatgtgttgctgtgtggcaagatgaacacaatagggttgagattattcacaatgatcaaggcaacaaaacaa 28221012  T
Q  196 caccttcttttgttgctttcactgatggtcaaaggttg 233  Q
    | |||||||||||||||||||| |||| | ||||||||    
T  28221011 ctccttcttttgttgctttcaccgatgatgaaaggttg 28220974  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 233
Target Start/End: Original strand, 4677465 - 4677615
Alignment:
Q  83 tgaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaa 182  Q
    |||||||| ||| ||||||||||| |||||||| || || || ||||| ||||| ||||||||| |  | |||||||| || |||||  |||| ||  ||    
T  4677465 tgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaa 4677564  T
Q  183 ggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttg 233  Q
    |||| |||||  |||||||||||||||||||| ||||||| ||||||||||    
T  4677565 ggcaacaaaacaacaccttcttttgttgcttttactgatgatcaaaggttg 4677615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 233
Target Start/End: Complemental strand, 15596220 - 15596086
Alignment:
Q  99 ggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatcacac 198  Q
    ||||||||||||||||||||||| || ||||| ||||| ||||| || ||  | || ||||| || ||||||||||| ||  |||| | || ||| ||||    
T  15596220 ggaatagaccttggaacaacgtattcttgtgttgctgtgtggcttgatgaacagaatagagtcgagattatccacaatgaccaaggaaacagaattacac 15596121  T
Q  199 cttcttttgttgctttcactgatggtcaaaggttg 233  Q
    ||||||||||| |||||||| ||| ||||||||||    
T  15596120 cttcttttgtttctttcactaatgatcaaaggttg 15596086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 34465148 - 34465220
Alignment:
Q  56 tttgaaagatcgcatggcgaacaaatgtgaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgt 130  Q
    |||||||||||  |||||||| ||||||||||||| ||| ||||||||||||||||| ||||| ||||| |||||    
T  34465148 tttgaaagatc--atggcgaaaaaatgtgaaggacgtgctgtgggaatagaccttggcacaacctactcatgtgt 34465220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 221
Target Start/End: Complemental strand, 43745985 - 43745863
Alignment:
Q  96 gtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatca 195  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||  || ||  |||| |||||||| ||||| ||||| ||| |||||| ||||   |    
T  43745985 gtgggaatagaccttggaacaacgtattcgtgtgttgctgtgtggcaagatgaacaaaatagagttgagattattcacaatgatcaaggcaacaaa---a 43745889  T
Q  196 caccttcttttgttgctttcactgat 221  Q
    || |||||||||||||||| ||||||    
T  43745888 caacttcttttgttgcttttactgat 43745863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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