View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16656_low_2 (Length: 617)
Name: NF16656_low_2
Description: NF16656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16656_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 389
Target Start/End: Complemental strand, 33691552 - 33691177
Alignment:
| Q |
14 |
cagagattaaaaagtcaggacaaacccaaggtagcagtcgagatagttaattgtcttgaaaatgacattaatcatgatgtgacgtatttgactcggaggg |
113 |
Q |
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| T |
33691552 |
cagagattaaaaagtcaggacaaacccaaggtagcagtcgagatagttaattgtcttgaaaatgacattaatcatgatgtgacgtatttgactaggaggg |
33691453 |
T |
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| Q |
114 |
tggtgcagttggaggcgtgaaggagaatttggtgcatcaaattataactcccaaattttcatcatattatttttaagccttaagacattaattctttgca |
213 |
Q |
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| T |
33691452 |
tggtgcagttggaggcgtgaaggagaatttggtgcatcaaattataactcccaaattttcatcaaattatttttaagccttaagacattaattctttgca |
33691353 |
T |
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| Q |
214 |
cggttgagaaaccttcaatggcgtttgttgaacatttgtctttgtgcattttgttctgtagcatattttcttagtcatagtatactcctacattttatat |
313 |
Q |
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| T |
33691352 |
cggttgagaaaccttcaatggcgtttgttgaacatttgtctttgtgcattttgttctgtagcatattttcttagtcatagtatactcctacattttatat |
33691253 |
T |
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| Q |
314 |
gtactcgatacagattgaagtaaaaggttaacgagtggtacaacaaattaagtaaatgtttttgaacttggccaaa |
389 |
Q |
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| T |
33691252 |
gtactcgatacagattgaagtaaaaggttaacgcgtagtacaacaaattaagtaaatgtttttgaacttggccaaa |
33691177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 385 - 601
Target Start/End: Complemental strand, 33691147 - 33690931
Alignment:
| Q |
385 |
ccaaatctcaagatgtttctaaaatgacgcacatttctttttcgatgtaaactctttgattctcaaaaaagatgccatgataatcctgagtttgatcatg |
484 |
Q |
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| T |
33691147 |
ccaaatctcaagatgtttctaaaatgacgtccatttctttttcggtgtaaactctctgattctcaaaaaagatgttctgataatcctgaatttaatcatg |
33691048 |
T |
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| Q |
485 |
aggtaagtattacttgattaaaaaggaaaatgatatttatgacatggtttcacgattaaataccgacgtgtatatttatcattgactgtcattttttccc |
584 |
Q |
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| T |
33691047 |
aggtaagtatgacttgattaaaaaggaaaatgatatttatgacatggtttcacgattaaataccgacgtgtatatttatcattgaccgtcattttttccc |
33690948 |
T |
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| Q |
585 |
accaacctccttgaatt |
601 |
Q |
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| T |
33690947 |
accaacctccatgaatt |
33690931 |
T |
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