View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16656_low_3 (Length: 584)
Name: NF16656_low_3
Description: NF16656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16656_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 18 - 568
Target Start/End: Complemental strand, 33576064 - 33575519
Alignment:
| Q |
18 |
cattcaaacctcaggatccctttgatatgatttagtctttctttaaatctcctggaaattgcatcataccaactggattatgtattgattacttgttaga |
117 |
Q |
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| T |
33576064 |
cattaaaacctcaggatccctttgatatgatttagtctttctttaaatctcctggaaattgcatcataccaactggattatgtattgattacttgttaga |
33575965 |
T |
|
| Q |
118 |
gctgctgtcttaattggtcttgtttggttggttgaagttgcttcagaaattctctcattgacatttctctccctgtccaaagtagagttttactctttta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33575964 |
gctgctgtcttaattggtcttgtttggttggttgaagttgcttcagaaattctctcattgac-----tctccctgtccaaagtagagttttactctttta |
33575870 |
T |
|
| Q |
218 |
aatgagctcatgtaattcatttagcattggttacnnnnnnncagcattagttactagctaaatataacttctttaacccaagtttgatttctggatagaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33575869 |
aatgagctcatgtaattcatttagcattggttactttttttcagcattagttactagctaaatataacttctttaacccaagtttgatttctggatagaa |
33575770 |
T |
|
| Q |
318 |
ataattacattgaatttgattgtgtattcattgtctgatttgaagttctaaacattagctgttatcttattgattacggtataatcttctgtccatagca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33575769 |
ataattacattgaatttgattgtgtattcattgtctgatttgaagttctaaacattagctgttatcttattgattacggtataatcttctgtccatagca |
33575670 |
T |
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| Q |
418 |
gtggtatgacttgtgttcaaatccaacactctgttagtaaaggtcctatgtattgcttatctgtagttagattatcttattgattaccacataatcttct |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33575669 |
gtggtatgacttgtgttcaaatccaacactctgttagtaaaggtcctatgtattgctaatctgtagttagattatcttattgattaccacataatcttct |
33575570 |
T |
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| Q |
518 |
atccatatcattctgaaatcttctatccatagtcatatggtaaatattcat |
568 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33575569 |
atccatatcattctgaaatcttctatccatagtcatatggtaaatattcat |
33575519 |
T |
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