View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16656_low_8 (Length: 371)
Name: NF16656_low_8
Description: NF16656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16656_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 3410556 - 3410890
Alignment:
| Q |
1 |
acacacatgaaaaataacataaacaggaaaatgaaacttaaattatgacattataccaacttaaagttgtgtacttttaggtatcatggttaaaattgga |
100 |
Q |
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| T |
3410556 |
acacacatgaaaaataacataaacaggaaaatgaaacttaaattatgacattataccaacttaaagttgtgtacttttaggtatcatggttaaaattgga |
3410655 |
T |
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| Q |
101 |
ttgtgcaaaacacatggattgttttatgtactctctttgtaacaaagta----taaacataagtgaacaaacaaaaatcaaatgtatttagtctaaaaac |
196 |
Q |
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| T |
3410656 |
ttgtgcaaaacacatggattgttttatgtactctctttgtaacaaagtacgtataaacataagtgaacaaacaaaaatcaaatgtatttagtctaaaaac |
3410755 |
T |
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| Q |
197 |
acttaattttttggatcccttttacttttattttatcacatggggagtatagtgaatattaaaaattgaacaaagatagtagaatcaaagagaacaaaac |
296 |
Q |
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| T |
3410756 |
acttaattttttggatcccttttacttttattttatcacatggggagtatagtgaatattaaaaattgaacaaagatagtagaatcaaagagaacaaaac |
3410855 |
T |
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| Q |
297 |
gaaacaagcaaacttcttttccttttctacatgtg |
331 |
Q |
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| T |
3410856 |
gaaacaagcaaacttcttttccttttctacgtgtg |
3410890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 177 - 269
Target Start/End: Complemental strand, 4243570 - 4243478
Alignment:
| Q |
177 |
aatgtatttagtctaaaaacacttaattttttggatcccttttacttttattttatcacatggggagtatagtgaatattaaaaattgaacaa |
269 |
Q |
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| T |
4243570 |
aatgtttttagtctaaaaacatttaaatttctaaatccttttggcttttattttgttacaaggagagtataatgaatattaaaaattgaacaa |
4243478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 4250680 - 4250625
Alignment:
| Q |
211 |
atcccttttacttttattttatcacatggggagtatagtgaatattaaaaattgaa |
266 |
Q |
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| T |
4250680 |
atccttttgacttttattttgttacaagaggagtatagtgaatattaaaaattgaa |
4250625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 4250840 - 4250776
Alignment:
| Q |
70 |
tgtacttttagg-tatcatggttaaaattggattgtgcaaaacacatggattgttttatgtactc |
133 |
Q |
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| T |
4250840 |
tgtactttttggatatcacgattaaaattggattgtgctaaacttatggattggtttatgtactc |
4250776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 14417754 - 14417823
Alignment:
| Q |
63 |
aaagttgtgtacttttaggtatcatggttaaaattggattgtgcaaaacacatggattgttttatgtact |
132 |
Q |
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| T |
14417754 |
aaagtagtgtacttttaggtatcatggttaaaattaaattgtacaaaacatatgcattgttttatgtact |
14417823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 14427639 - 14427681
Alignment:
| Q |
70 |
tgtacttttaggtatcatggttaaaattggattgtgcaaaaca |
112 |
Q |
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| T |
14427639 |
tgtactattaggtatcatggttaaaattagattgtgcaaaaca |
14427681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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