View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16656_low_9 (Length: 358)
Name: NF16656_low_9
Description: NF16656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16656_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 358
Target Start/End: Complemental strand, 31859928 - 31859584
Alignment:
| Q |
14 |
gttcactgaaaagataataagcacaccctgaaataagaagtgtcatatcaatgcaggtacttcttgcactgcatggcaacatgagtagattaattacatc |
113 |
Q |
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| T |
31859928 |
gttcactgaaaagataataagcacaccctgaaataagaagtgtcatatcaatgcaggtacttcttgcactgcatggcaacatgagtagattaattacatc |
31859829 |
T |
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| Q |
114 |
taagtggttacagaaaaacggcgtgctcactatggaagcatctgaatggaatggattaacacaaattctaaaagaactatttgaagcaaaaacttcaact |
213 |
Q |
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| T |
31859828 |
taagtggttacagaaaaacggcgtgctcactatggaagcatctgaatggaatggattaacacaaattctaaaagaactatttgaagcaaaaacttcaact |
31859729 |
T |
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| Q |
214 |
caaagcaacgactttgatgctcactttccagctccggagggtctgaattctaaatttattagcatacaggaattgccaaacccaacatttgtctttgttg |
313 |
Q |
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| T |
31859728 |
cataacaacgactttgatactcactttccagctccggagggtctgaattctaaatttattagcatacaggaattgccaaacccaacatttgtcattgttg |
31859629 |
T |
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| Q |
314 |
ttgatattgatctactagacttgagcacagatatatggaaagaac |
358 |
Q |
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| T |
31859628 |
tggatattgatctactagacttgagcacagatatatggaaagaac |
31859584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 8869428 - 8869545
Alignment:
| Q |
63 |
aatgcaggtacttcttgcactgcatggcaacatgagtagattaattacatctaagtggttacagaaaaacggcgtgctcactatggaagcatctgaatgg |
162 |
Q |
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| T |
8869428 |
aatgcaggtattgcttgcactacaaggaaacatgggtagaataataacatcaaagtggttaaccaaaaaaggggtgtgcacaatggaagcatctgaatgg |
8869527 |
T |
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| Q |
163 |
aatggattaacacaaatt |
180 |
Q |
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| T |
8869528 |
aatggactaacacaaatt |
8869545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 8869672 - 8869729
Alignment:
| Q |
301 |
tttgtctttgttgttgatattgatctactagacttgagcacagatatatggaaagaac |
358 |
Q |
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| T |
8869672 |
tttgtcattgttgttgacattggtttgcttgacttaagcacagatatatggaaagaac |
8869729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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