View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16657_high_7 (Length: 224)
Name: NF16657_high_7
Description: NF16657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16657_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 56484367 - 56484165
Alignment:
| Q |
15 |
agtgatatgttttttattagctgttactgttatagtaagttggttttaaatacatgtgctttttattgaggaattgagtgcaaaccaatttctgtgtgca |
114 |
Q |
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| T |
56484367 |
agtgatatgttttgtattagctgttactgttatagtaagttggttttaaatacatgtgctttttattgaggaattgagtgcaaaccaatttctgtgtgca |
56484268 |
T |
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| Q |
115 |
ttcagaattctgttggaggacattcagaatttactggtcatcacttcaattcaaacataaagtaagaaaaatttcagttggtttaccttctacatgatga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
56484267 |
ttcagaattctgttggaggacattcagaatttactggtcatcacttcaattcaaacataaagtaagaaaaatttcagttggtttaccttctacatgaaga |
56484168 |
T |
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| Q |
215 |
tgt |
217 |
Q |
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||| |
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| T |
56484167 |
tgt |
56484165 |
T |
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