View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16657_low_1 (Length: 557)

Name: NF16657_low_1
Description: NF16657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16657_low_1
NF16657_low_1
[»] chr8 (2 HSPs)
chr8 (11-353)||(29151249-29151591)
chr8 (347-543)||(29156620-29156816)
[»] chr2 (11 HSPs)
chr2 (347-541)||(2580890-2581084)
chr2 (338-543)||(2595576-2595781)
chr2 (366-543)||(2588534-2588711)
chr2 (344-543)||(2576457-2576656)
chr2 (140-245)||(2576286-2576391)
chr2 (146-273)||(2586059-2586183)
chr2 (57-110)||(2585991-2586044)
chr2 (145-278)||(2595422-2595546)
chr2 (218-281)||(2580767-2580830)
chr2 (28-112)||(2595329-2595410)
chr2 (31-111)||(2580619-2580696)
[»] chr6 (2 HSPs)
chr6 (338-544)||(30398693-30398899)
chr6 (25-112)||(30398416-30398500)
[»] chr7 (3 HSPs)
chr7 (347-543)||(46768949-46769145)
chr7 (348-500)||(36254946-36255098)
chr7 (348-401)||(36262632-36262685)
[»] chr4 (1 HSPs)
chr4 (363-444)||(19358725-19358806)


Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 29151249 - 29151591
Alignment:
Q  11 cataggaaagaaacttattcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagat 110  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29151249 cataggcaagaaacttattcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagat 29151348  T
Q  111 atttgttatccaagtaaagatatggaatttcgcaatgctattggattttgcaatggattgttttgtttaatttgttatgctgttgattattacgtgtctc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29151349 atttgttatccaagtaaagatatggaatttcgcaatgctattggattttgcaatggattgttttgtttaatttgttatgctgttgattattacgtgtctc 29151448  T
Q  211 aaactgtagagttctggttccgtttctggaaccctgtcgtacttacaatgtcaaaaaggttggcgcattttacaatgtcaaagaagttggcacatatttt 310  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  29151449 aaactgtagagttttggttccgtttctggaaccctgtcgtacttacaatgtcaaaaaggttggcgcattttataatgtcaaagaagttggcgcatatttt 29151548  T
Q  311 gagtgtagatatgtatatggccatcagtaaacattgcaagttt 353  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29151549 gagtgtagatatgtatatggccatcagtaaacattgcaagttt 29151591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 347 - 543
Target Start/End: Original strand, 29156620 - 29156816
Alignment:
Q  347 caagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagttttaagt 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29156620 caagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagttttaagt 29156719  T
Q  447 gtggcagacaatgtttgaaaaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgtatttga 543  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29156720 gtggcagacaatgtttggaaaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgtatttga 29156816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 347 - 541
Target Start/End: Original strand, 2580890 - 2581084
Alignment:
Q  347 caagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagttttaagt 446  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||| |||||||| |    
T  2580890 caagtttgcttttgtttatgataattcatcggagacatataagcttgtaatgttaatgttggatgtagttgaaaataaaactcatgtgcgagttttaaat 2580989  T
Q  447 gtggcagacaatgtttgaaaaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgtattt 541  Q
    ||| | || |||||||| ||||||||| || ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2580990 gtgactgataatgtttggaaaactatttcaaattttccggcggttcctcttcctaatatatatactggtcagggtgggagtgatggtgtgtattt 2581084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 338 - 543
Target Start/End: Original strand, 2595576 - 2595781
Alignment:
Q  338 taaacattgcaagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaa 437  Q
    |||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||| ||||| ||||||||||| || ||||||||||||||||||||    
T  2595576 taaacattacaagtttacttttgtttatgataattcatcggagacgtataaggttgtattgttaatgttggatgtagttcaaaatagaactcatgtgcaa 2595675  T
Q  438 gttttaagtgtggcagacaatgtttgaaaaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgt 537  Q
    || |||| |||||| || |||||||| |||||||||||| ||||||| ||||||||||||||||||  ||| || ||||||||||||  |||||||||||    
T  2595676 gtattaaatgtggctgataatgtttggaaaactattccaaattttcctgcggttcctcttcctaatcaatacactggtcagggtgggtctgatggtgtgt 2595775  T
Q  538 atttga 543  Q
    ||||||    
T  2595776 atttga 2595781  T

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Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 366 - 543
Target Start/End: Original strand, 2588534 - 2588711
Alignment:
Q  366 gataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagttttaagtgtggcagacaatgtttgaa 465  Q
    |||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| || || |||||||| |    
T  2588534 gataattcatcgaaaacatataaggttgtaatgttaatgttggatgtagttgaaaatagaactcatgtgcgagttttaagtgtcgctgataatgtttgga 2588633  T
Q  466 aaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgtatttga 543  Q
    |||| ||| || ||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||    
T  2588634 aaacaatttcaaattttcctgcggttcctcttcctgatagatatactggtcagggtgggagtgatggtgtgtatttga 2588711  T

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Target: chr2; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 344 - 543
Target Start/End: Original strand, 2576457 - 2576656
Alignment:
Q  344 ttgcaagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagtttta 443  Q
    ||||||||| || ||| | |||||| |||| || ||||| |||||||||||| |||||  |||||||||| ||||||||| |||||| |||| ||||||     
T  2576457 ttgcaagttcgcgtttctttatgatgattcttcagagacttataaggttgtattgttaaagttggatgtagttgaaaataaaactcacgtgcgagttttt 2576556  T
Q  444 agtgtggcagacaatgtttgaaaaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgtatttga 543  Q
    |||||||| || |||| ||| |||||||||||| ||||||| || |||||||||||||||  |||||| | ||||||||||||| |||||||||||||||    
T  2576557 agtgtggctgataatgcttggaaaactattccaaattttcctgcagttcctcttcctaatcgatatactgatcagggtgggagtcatggtgtgtatttga 2576656  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 2576286 - 2576391
Alignment:
Q  140 tcgcaatgctattggattttgcaatggattgttttgtttaatttgttatgctgttgattattacgtgtctcaaactgtagagttctggttccgtttctgg 239  Q
    |||| |||||||||| | |||||||||||||||||||||  || ||||| || |  ||| ||| |||||| || ||| ||||||||||||||||||||||    
T  2576286 tcgctatgctattgggtcttgcaatggattgttttgtttgcttggttatactttcaatttttatgtgtctgaacctggagagttctggttccgtttctgg 2576385  T
Q  240 aaccct 245  Q
    ||||||    
T  2576386 aaccct 2576391  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 146 - 273
Target Start/End: Original strand, 2586059 - 2586183
Alignment:
Q  146 tgctattggattttgcaatggattgttttgtttaatttgttatgctgttgattattacgtgtctcaaactgtagagttctggttccgtttctggaaccct 245  Q
    |||||||||||  |||||||||||||||||||| ||| ||||| || ||   |||| | | ||| || |||||||| ||||||||||||| |||||||||    
T  2586059 tgctattggatcctgcaatggattgttttgtttgattggttatactttt---tattccatctctaaacctgtagaggtctggttccgtttatggaaccct 2586155  T
Q  246 gtcgtacttacaatgtcaaaaaggttgg 273  Q
    ||| ||| |||||||| ||||| |||||    
T  2586156 gtcatacgtacaatgttaaaaaagttgg 2586183  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 2585991 - 2586044
Alignment:
Q  57 cttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagat 110  Q
    ||||||||||||| |||||||||||||||||||||||||||| || ||||||||    
T  2585991 cttgagaacccgttgatcctccttccggataacctttgttatcaatgtcaagat 2586044  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 278
Target Start/End: Original strand, 2595422 - 2595546
Alignment:
Q  145 atgctattggattttgcaatggattgttttgtttaatttgttatgctgttgattattacgtgtctcaaactgtagagttctggttccgtttctggaaccc 244  Q
    |||||||||||| |||||||||| |||||||||| ||| ||||| ||         ||| | ||| || ||| |||||||||||||||||||||||||||    
T  2595422 atgctattggatcttgcaatggaatgttttgtttgattggttattct---------tacttatctgaacctggagagttctggttccgtttctggaaccc 2595512  T
Q  245 tgtcgtacttacaatgtcaaaaaggttggcgcat 278  Q
    |||| ||| || ||||||||||| ||||| ||||    
T  2595513 tgtcatacgtataatgtcaaaaaagttggggcat 2595546  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 2580767 - 2580830
Alignment:
Q  218 agagttctggttccgtttctggaaccctgtcgtacttacaatgtcaaaaaggttggcgcatttt 281  Q
    |||||| ||||||||| |||||||||||||| ||| |||||||||||||| ||||| |||||||    
T  2580767 agagttttggttccgtctctggaaccctgtcatacatacaatgtcaaaaaagttggggcatttt 2580830  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 2595329 - 2595410
Alignment:
Q  28 ttcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagatat 112  Q
    ||||||||||||||| ||||||||| |||   |||||||||| ||||||||||||||| |||||||| |||  | ||||||||||    
T  2595329 ttcccttcccggtgcatcgtttaatcctt---gagaacccgttgatcctccttccggagaacctttgctatcgatgtcaagatat 2595410  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 2580619 - 2580696
Alignment:
Q  31 ccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagata 111  Q
    |||||||| ||||||||||||||||    |||||||||| |||||||||||| ||||||||| ||  |||| |||||||||    
T  2580619 ccttcccgatgcgtcgtttaattctc---gagaacccgtcgatcctccttccagataaccttcgtattgaatgtcaagata 2580696  T

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Target: chr6 (Bit Score: 111; Significance: 9e-56; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 338 - 544
Target Start/End: Original strand, 30398693 - 30398899
Alignment:
Q  338 taaacattgcaagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaa 437  Q
    |||||||| ||||||| ||||||| ||||| ||||||||| |||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||| |    
T  30398693 taaacattacaagttttcttttgtttatgacaattcatcgaagacgtataaggttgtaatgttaatgttggatgcagttgaaaatagaactcatgtgcga 30398792  T
Q  438 gttttaagtgtggcagacaatgtttgaaaaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgt 537  Q
    ||||||||||||||  | |||||||| |||||||||||| ||||||  |||||||||||||||| |  |||||| ||||| |||| | ||||||||||||    
T  30398793 gttttaagtgtggctaataatgtttggaaaactattccaaattttcatgcggttcctcttcctactcgatatactggtcaaggtgagtgtgatggtgtgt 30398892  T
Q  538 atttgat 544  Q
    |||||||    
T  30398893 atttgat 30398899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 30398416 - 30398500
Alignment:
Q  25 ttattcccttcccggtgcgtcgtttaattcttcttgagaacccgtggatcctccttccggataacctttgttatgaaagtcaagatat 112  Q
    |||||||||||||||||| || |||||||||    |||||||||| ||||||||||||| |||||| | |||||  | ||||||||||    
T  30398416 ttattcccttcccggtgcatcttttaattctc---gagaacccgttgatcctccttccgtataaccctagttatcgatgtcaagatat 30398500  T

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Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 347 - 543
Target Start/End: Original strand, 46768949 - 46769145
Alignment:
Q  347 caagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagttttaagt 446  Q
    ||||||||| ||||  | |||||||||||||||||| ||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||| |||    
T  46768949 caagtttgcctttggttttgataattcatcggagacttataaggttgtaatgttaacgttggatgtagttgaaaatagaactcatgtgcaagttttgagt 46769048  T
Q  447 gtggcagacaatgtttgaaaaactattccagattttcccgcggttcctcttcctaatatatataccggtcagggtgggagtgatggtgtgtatttga 543  Q
    ||||  || ||| |||| | |||||||| |  |||||| ||||||||||||||||||   ||||    |||||||||||||||||||||||||||||    
T  46769049 gtgggtgataatatttggagaactattcaaagttttcctgcggttcctcttcctaattgctataaaaatcagggtgggagtgatggtgtgtatttga 46769145  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 500
Target Start/End: Original strand, 36254946 - 36255098
Alignment:
Q  348 aagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagttttaagtg 447  Q
    |||||||| ||||  ||| |||||||||| ||||| ||||||||||| |||||| | |||||||   || ||||||||||| | ||||||  |||| |||    
T  36254946 aagtttgcgtttggttattataattcatcagagacttataaggttgtgatgttaattttggatgatgttaaaaatagaactgacgtgcaaactttatgtg 36255045  T
Q  448 tggcagacaatgtttgaaaaactattccagattttcccgcggttcctcttcct 500  Q
    ||    | |||||||| ||| |||||| | ||||||| || |||| |||||||    
T  36255046 tgtgtaataatgtttggaaacctattcaaaattttcctgctgttcttcttcct 36255098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 36262632 - 36262685
Alignment:
Q  348 aagtttgcttttgtgtatgataattcatcggagacatataaggttgtaatgtta 401  Q
    |||||||| ||||  |||||||||||||| ||||| ||||||||||| ||||||    
T  36262632 aagtttgcatttggttatgataattcatcagagacttataaggttgtgatgtta 36262685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 444
Target Start/End: Original strand, 19358725 - 19358806
Alignment:
Q  363 tatgataattcatcggagacatataaggttgtaatgttattgttggatgtatttgaaaatagaactcatgtgcaagttttaa 444  Q
    |||||||| |||||| |||| ||||||||||| |||||| | ||||||| |  |||||| ||||||| || || ||||||||    
T  19358725 tatgataactcatcgcagacttataaggttgtgatgttacttttggatgaagctgaaaacagaactcgtgcgcgagttttaa 19358806  T

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