View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16657_low_2 (Length: 388)
Name: NF16657_low_2
Description: NF16657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16657_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 380
Target Start/End: Original strand, 15407664 - 15408022
Alignment:
| Q |
20 |
ggagagagtttaagattaagcttatcgaagaagaggatggaattaatggccccaagtaagatttattgcatatgtacactttaaacatagagaatataaa |
119 |
Q |
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| T |
15407664 |
ggagagagtttaagattaagcttatcgaagaagaggatggaattaatggccccaagtaagatatattgcatatgtacactttaaacatagagaatataaa |
15407763 |
T |
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| Q |
120 |
cacaataatgcaatatttttatttggctctgagacacaagcatacaaaatatgacactaacacaataatttcatttggctctgatacacaatcatgacag |
219 |
Q |
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| T |
15407764 |
cacaataatgcaatatttttatttggctctga--cacaagcatacaaaatatgacactaacacaataatttcatttggctctgatacacaatcatgacag |
15407861 |
T |
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| Q |
220 |
acttggattattattannnnnnngaaccaagttaaatttcaactgatacaaatactaataatttttcagaagggaaagagaatacaaagtggtgatcaag |
319 |
Q |
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| T |
15407862 |
acttggattattattatttttttgaaccaagttaaatttcaactgatacaaatactaataatttttcagaagggaaagagaatacaaagtggtgatcaag |
15407961 |
T |
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| Q |
320 |
tttgttgcaagggctaacttgcatcacctgggacaatttctagccggaaagcgtgatgatg |
380 |
Q |
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| T |
15407962 |
tttgttgcaagggctaacttgcatcacttgggacaatttctagccggaaagcgtgctgatg |
15408022 |
T |
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