View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16657_low_3 (Length: 370)
Name: NF16657_low_3
Description: NF16657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16657_low_3 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
| |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0697 (2 HSPs) |
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|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 13340688 - 13341045
Alignment:
| Q |
13 |
catcacataaataataataccctatcataaataaaacaatggttaacatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13340688 |
catcacataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
13340787 |
T |
|
| Q |
113 |
accttgaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13340788 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
13340887 |
T |
|
| Q |
213 |
tgtaaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgt |
312 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13340888 |
tgtaaatctggcgagcatacacctaacacatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgt |
13340987 |
T |
|
| Q |
313 |
aagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgtt |
370 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13340988 |
aggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgtt |
13341045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 270 - 370
Target Start/End: Original strand, 13330030 - 13330130
Alignment:
| Q |
270 |
ctatatctacttttgtcagcttccggcacattgaccttgatgtaagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgt |
369 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13330030 |
ctatatctacttttgtcagcttcaggcacattgaccttgatgtaggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgt |
13330129 |
T |
|
| Q |
370 |
t |
370 |
Q |
| |
|
| |
|
|
| T |
13330130 |
t |
13330130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 5670221 - 5670578
Alignment:
| Q |
13 |
catcacataaataataataccctatcataaataaaacaatggttaacatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5670221 |
catcacataaataataataccctatcataaataaaacaatagttaaaatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
5670320 |
T |
|
| Q |
113 |
accttgaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5670321 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
5670420 |
T |
|
| Q |
213 |
tgtaaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgt |
312 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5670421 |
tgtaaatctggcgagcatatacctaacatatttgtagctatctcacccttccttgtcctatatctacttttgtcagcttcaggcacattgaccttgatgt |
5670520 |
T |
|
| Q |
313 |
aagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgtt |
370 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5670521 |
aggtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgtt |
5670578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 10639519 - 10639162
Alignment:
| Q |
13 |
catcacataaataataataccctatcataaataaaacaatggttaacatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||||| ||||||||| |||||||| ||| ||||||| |
|
|
| T |
10639519 |
catcacataaataataataccctatcataaataaaactgaagttaaaacccataaactatgcaagacatattttatttttatattaatttatactattgt |
10639420 |
T |
|
| Q |
113 |
accttgaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10639419 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
10639320 |
T |
|
| Q |
213 |
tgtaaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10639319 |
tgtaaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgt |
10639220 |
T |
|
| Q |
313 |
aagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgtt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10639219 |
aagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgtt |
10639162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 32716092 - 32716449
Alignment:
| Q |
13 |
catcacataaataataataccctatcataaataaaacaatggttaacatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||| | ||||||||| |||||||| ||| ||||||| |
|
|
| T |
32716092 |
catcacataaataataataccctatcataaataaaactgaagttaaaacccataaactatgcaagacgtattttatttttatattaatttatactattgt |
32716191 |
T |
|
| Q |
113 |
accttgaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
32716192 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggtaaaacataaatgaat |
32716291 |
T |
|
| Q |
213 |
tgtaaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32716292 |
tgtaaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgt |
32716391 |
T |
|
| Q |
313 |
aagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgtt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32716392 |
aagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgtt |
32716449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 26663320 - 26662963
Alignment:
| Q |
13 |
catcacataaataataataccctatcataaataaaacaatggttaacatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||| ||| |||||||||||||||||| ||||||||| |||||||| ||| ||||||| |
|
|
| T |
26663320 |
catcacataaataataataccctatcataaataaacctgaagttaaaatccataaactatgcaagacatattttatttttatattaatttatactattgt |
26663221 |
T |
|
| Q |
113 |
accttgaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26663220 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
26663121 |
T |
|
| Q |
213 |
tgtaaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26663120 |
tgtaaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccagcacattgaccttgatgt |
26663021 |
T |
|
| Q |
313 |
aagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgtt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26663020 |
aagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgtt |
26662963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 22903579 - 22903222
Alignment:
| Q |
13 |
catcacataaataataataccctatcataaataaaacaatggttaacatctataaactatgcaagacatgttttattttaatattaatctatgctattgt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| | | |||||||||||||||| | ||||||||| |||||||| ||| ||||||| |
|
|
| T |
22903579 |
catcacataaataataataccctatcataaataaaactgaagttaaaacccataaactatgcaagacgtattttatttttatattaatttatactattgt |
22903480 |
T |
|
| Q |
113 |
accttgaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22903479 |
accttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatgaat |
22903380 |
T |
|
| Q |
213 |
tgtaaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22903379 |
tgtaaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgt |
22903280 |
T |
|
| Q |
313 |
aagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgtt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22903279 |
aagtgccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgtt |
22903222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 13 - 340
Target Start/End: Complemental strand, 34149379 - 34149051
Alignment:
| Q |
13 |
catcacataaataataataccctatcataaataaaacaatggttaacatc-tataaactatgcaagacatgttttattttaatattaatctatgctat-t |
110 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| | ||| || |||||| |||| |||||||||| ||| |||| || ||| |||| | | | |
|
|
| T |
34149379 |
catcacataaataataataccctatcacaaataaaattaaaattattttcctataaa-tatgtaagacatgttctatattaacatgaatttatgttgtgt |
34149281 |
T |
|
| Q |
111 |
gtaccttgaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctagagtcagcagctgatccctcccaaccaggcaaaacatatatga |
210 |
Q |
| |
|
||||||||||||| |||| ||||||| |||||||||||||| ||| ||||||||||| ||||||||||| || ||||| |||||||| |||||||| | |
|
|
| T |
34149280 |
ataccttgaggaacccttaacccatttgttcgagaaatagcatttctgaggactctagaatcagcagctgaaccttcccacccaggcaacacatatataa |
34149181 |
T |
|
| Q |
211 |
attgtaaatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgat |
310 |
Q |
| |
|
|||| | |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
34149180 |
attgcatatctggtgagcatacacccaacacgtttgttgctatctcacccttccttgttctgaatctagttttgtcagcttcgggcacattgaccttgat |
34149081 |
T |
|
| Q |
311 |
gtaagtgccatcaagagctcctaaacaatt |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34149080 |
gtaagtgccatcaagagctcctaaacaatt |
34149051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 217 - 370
Target Start/End: Original strand, 5529 - 5682
Alignment:
| Q |
217 |
aatctggtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttccggcacattgaccttgatgtaagt |
316 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
5529 |
aatctagtgagcatacacctaacacatttgtagctatctcacccttccttgttctatatctacttttgtcagcttctggcacaatgaccttgatgtaagt |
5628 |
T |
|
| Q |
317 |
gccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgtt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5629 |
gccatcaagagctcctaaacaatttttaaagtatttccatcgttcgtctgtgtt |
5682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 5372 - 5529
Alignment:
| Q |
13 |
catcacataaataataataccctatcataaataaaacaatggttaaca-tctataaactatgcaagacatgttttattttaatattaatctatgctattg |
111 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | ||||| | || |||||||||||||||||| ||||||||| |||||||| ||| |||||| |
|
|
| T |
5372 |
catcacataaataataataccctgtcataaataaacctgaagttaaaaatccataaactatgcaagacatattttatttttatattaatttatactattg |
5471 |
T |
|
| Q |
112 |
taccttgaggaacttttaaaccatttggtcgagaaatagcatctctaaggactctaga |
169 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5472 |
tatcttgaggaacctttaaaccatttggtcgagaaatagcatctctaaggactctaga |
5529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 48943430 - 48943486
Alignment:
| Q |
284 |
gtcagcttccggcacattgaccttgatgtaagtgccatcaagagctcctaaacaatt |
340 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48943430 |
gtcagcttcgggcacattgaccttgatgtaagtgccatcaagagctcctaaacaatt |
48943486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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