View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16657_low_4 (Length: 348)
Name: NF16657_low_4
Description: NF16657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16657_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 28914785 - 28915123
Alignment:
| Q |
1 |
gccctaataaccatgtggagatatagctttctataatttctacaatggaataaatagacgttgacatcaatgtcgaagagtcaaaacatgtattggctac |
100 |
Q |
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| T |
28914785 |
gccctaataaccatgtggagatatagctttctataatttctacaatggaataaatagacgttgacatcaatgtcgaagagtcaaaacatgtgttggctac |
28914884 |
T |
|
| Q |
101 |
tacctttacattttaattaccaaacgaaaaaatgaatattagattttatcaagcatgtgttcaggtgaggatctgttgcatttatatttcaggcaaaaga |
200 |
Q |
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| T |
28914885 |
tacctttacattttaattaccaaacgaaaaaatgaatattagattttatcaagcatgtgttcaggtgaggatctgttgcatttatatttcaggcaaaaga |
28914984 |
T |
|
| Q |
201 |
atagttgaaacaagtgaatagcattaatttaatgcttgattgcaaagaaattggtatatcagtagactagtagatagctacaaaaattaatatcctctag |
300 |
Q |
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| T |
28914985 |
atagttgaaacaagtgaatagcattaatttaatgcttgattgcaaagaaattggtatatcagtagactagtagatagctacaaaaattaatatcctctag |
28915084 |
T |
|
| Q |
301 |
cttaagtctcaaacttgatctatggatacctgatgatgt |
339 |
Q |
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| T |
28915085 |
cttaagtctcaaacttgatctatggatacctgatgatgt |
28915123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 28924015 - 28924272
Alignment:
| Q |
1 |
gccctaataaccatgtggagatatagctttctataatttctacaatggaataaatagacgttgacatcaatgtcgaagagtcaaaacatgtattggctac |
100 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||| | ||||||| |
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| T |
28924015 |
gccctaataaccatgtggacatatagctttctatgatttctacaatggaagaaatagactttgacttcaatgtcaaagagtcaaaacatgcactggctac |
28924114 |
T |
|
| Q |
101 |
tacctttacattttaattaccaaacgaaaaaatgaatattagattttatcaagcatgtgttcaggtgaggatctgttgcatttatatttcaggcaaaaga |
200 |
Q |
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||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| |
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| T |
28924115 |
tacctttacattttaattatcaaacaaaataatgaatattagattttatcaagcatgtggtaaggtgaggatctgttacatttatatttcaggcaaaaga |
28924214 |
T |
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| Q |
201 |
atagttgaaacaagtgaatagcattaatttaatgcttgattgcaaagaaattggtata |
258 |
Q |
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|||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||| |
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| T |
28924215 |
atagttgaaacaagtgaacagcattaatttaaggctagattttgaagaaattggtata |
28924272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 5 - 335
Target Start/End: Original strand, 28900355 - 28900684
Alignment:
| Q |
5 |
taataaccatgtggagatatagctttctataatttctacaatggaataaat-agacgttgacatcaatgtcgaagagtcaaaacatgtattggctactac |
103 |
Q |
| |
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|||||||||| ||||||||||||||||||| ||||||||||| ||| |||| |||| || | ||| ||| |||||||||||| |||||||||||||||| |
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| T |
28900355 |
taataaccatttggagatatagctttctatgatttctacaattgaagaaattagacatttgcttcattgttgaagagtcaaaa-atgtattggctactac |
28900453 |
T |
|
| Q |
104 |
ctttacattttaattaccaaacgaaaaaatgaatattagattttatcaagcatgtgttcaggtgaggatctgttgcatttatatttcaggcaaaagaata |
203 |
Q |
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||| |||| ||||||||||||| || ||||||| | ||||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||||||| |
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| T |
28900454 |
cttaacatgttaattaccaaacaaagtaatgaatttaagattttatcaagcatgtggtaaggtgagggtctgttgcatttatatttc-ggcaaaagaata |
28900552 |
T |
|
| Q |
204 |
gttgaaacaagtgaatagcattaatttaatgcttgattgcaaagaaattggtatatcagtagactagtagatagctacaaaaattaatatcctctagctt |
303 |
Q |
| |
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|||||||||||||| ||| || |||| || ||| |||| |||||||||||||| || ||||| |||||||||| |||| |||||||| ||||||||| |
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| T |
28900553 |
gttgaaacaagtgactaggataaattaaaggctagattttgaagaaattggtataatagaagactcgtagatagctgcaaatattaatatactctagctt |
28900652 |
T |
|
| Q |
304 |
aagtctcaaacttgatctatggatacctgatg |
335 |
Q |
| |
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| ||||||| |||||||||||||||||||||| |
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| T |
28900653 |
atgtctcaagcttgatctatggatacctgatg |
28900684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 335
Target Start/End: Original strand, 28932887 - 28933225
Alignment:
| Q |
4 |
ctaataaccatgtggagatatagctttctataatttctacaatggaataaatag-------ac-gttgacatcaatgtcgaagagtcaaaacatgtattg |
95 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| ||||||||||| |||| | || |||||| |||| | ||||||||||||||||||||| |
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| T |
28932887 |
ctaataaccatgcatagatatagctttctatgattactacaatggaagaaattgggctttgacagttgacttcaacgcagaagagtcaaaacatgtattg |
28932986 |
T |
|
| Q |
96 |
gctactacctttacattttaa-ttaccaaacgaaaaaatgaatattagattttatcaagcatgtgttcaggtgaggatctgttgcatttatatttcaggc |
194 |
Q |
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| T |
28932987 |
gctactacctttacattttaacttaccaagc-ataatatgaacatgagatattatccagcatgtggtaaggcatgaatccattgcatttatatt-caggc |
28933084 |
T |
|
| Q |
195 |
aaaagaatagttgaaacaagtgaatagcattaatttaatgcttgattgcaaagaaattggtatatcagtagactagtagatagctacaaaaattaatatc |
294 |
Q |
| |
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|||||||||||| ||||| | |||||||||||| || | | |||| |||||||||||||| |||||||||||||||||||| ||| ||||| || |
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| T |
28933085 |
aaaagaatagtttaaacatgcgaatagcattaaccgaaggatagattttgaagaaattggtatagtagtagactagtagatagctataaatattaaaata |
28933184 |
T |
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| Q |
295 |
ctctagcttaagtctcaaacttgatctatggatacctgatg |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
28933185 |
ctctagcttaagtctcaaacttgatctatggatacctgatg |
28933225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 28924286 - 28924334
Alignment:
| Q |
287 |
ttaatatcctctagcttaagtctcaaacttgatctatggatacctgatg |
335 |
Q |
| |
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||||||| ||| ||||||| |||||| |||||| ||||||||||||||| |
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| T |
28924286 |
ttaatatgctccagcttaaatctcaatcttgatatatggatacctgatg |
28924334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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