View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16658_high_29 (Length: 309)
Name: NF16658_high_29
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 48393374 - 48393540
Alignment:
| Q |
42 |
acatctgaactcgcttcctcctccattttgcgtacaata-----tccatgtatgtatctcagcgaattggaaatacaatccaaatcttcatccatgtctg |
136 |
Q |
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| T |
48393374 |
acatctgaactcgcttcctcctccattttgcgtacaatataatatccatgtatgtatctctgcgaattggaaatacaatccaaatcttcatccatgtctg |
48393473 |
T |
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| Q |
137 |
cagcagcttcgagatcatgatcaggaattgcagcctccttatcagatagaaaagtagcattgtcgat |
203 |
Q |
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| T |
48393474 |
cagcagcttcgagatcatgatcaggaattgcagcctccttatcagatagaaaagtagcattgtcgat |
48393540 |
T |
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Back To:
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 48393539 - 48393575
Alignment:
| Q |
267 |
ataatcacattatgaatttcatttttattttcttcga |
303 |
Q |
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| T |
48393539 |
ataatcacattatgaatttcatttttatttttttcga |
48393575 |
T |
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