View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16658_high_30 (Length: 289)

Name: NF16658_high_30
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16658_high_30
NF16658_high_30
[»] chr7 (13 HSPs)
chr7 (16-278)||(29107080-29107353)
chr7 (16-242)||(29899637-29899860)
chr7 (57-207)||(29475931-29476082)
chr7 (57-121)||(29445334-29445398)
chr7 (63-213)||(29453742-29453893)
chr7 (64-217)||(29430603-29430757)
chr7 (176-230)||(29885547-29885601)
chr7 (61-184)||(29459674-29459803)
chr7 (54-122)||(19887418-19887486)
chr7 (56-124)||(29872022-29872090)
chr7 (54-130)||(29921692-29921768)
chr7 (56-96)||(29881565-29881605)
chr7 (54-122)||(19779897-19779965)
[»] chr4 (4 HSPs)
chr4 (61-129)||(3560658-3560726)
chr4 (56-122)||(53429810-53429876)
chr4 (55-96)||(29945855-29945896)
chr4 (84-129)||(3558067-3558112)
[»] chr2 (4 HSPs)
chr2 (55-96)||(29571551-29571592)
chr2 (55-96)||(29578340-29578381)
chr2 (55-96)||(29580895-29580936)
chr2 (55-96)||(29610184-29610225)
[»] chr1 (4 HSPs)
chr1 (53-122)||(4571206-4571275)
chr1 (55-127)||(4014655-4014727)
chr1 (62-132)||(17563872-17563942)
chr1 (55-119)||(4016497-4016561)
[»] scaffold0242 (2 HSPs)
scaffold0242 (57-122)||(13414-13478)
scaffold0242 (57-122)||(22249-22313)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 29107080 - 29107353
Alignment:
Q  16 aatataactagagaagatgcacgcttgtgttgggctatggattacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttactt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29107080 aatataactagagaagatgcacgcttgtgttgggctatggattacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttactt 29107179  T
Q  116 -----gtttgaacttatgtttagtagtagatgttgtttt------attataattgattgcgtgattattcatttttatgactgcttaggttaattgtatt 204  Q
         ||||||||||||||||||||||| ||||||||||      |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29107180 tacttgtttgaacttatgtttagtagtatatgttgttttgtttttattataattgattgagtgattattcatttttatgactgcttaggttaattgtatt 29107279  T
Q  205 tttggatgactatgagactatctatttgctattattacagtaatccatctccttgctacattgtactatttcat 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29107280 tttggatgactatgagactatctatttgctattattacagtaatccatctccttgctacattgtactatttcat 29107353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 29899637 - 29899860
Alignment:
Q  16 aatataactagagaagatgcacgcttgtgttgggctatggattacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttactt 115  Q
    ||||||||||||||||| | | ||  || |||||| |||||||||  |||||||||||||||||| | ||||||||    |||||||||| |||||||||    
T  29899637 aatataactagagaagaagtatgcgggttttgggccatggattacactgaaagcttagtttcaatttcttgaaagt----tgcttttctagggtttactt 29899732  T
Q  116 gtttgaacttatgtttagtagtagatgttgtttt-attataattgattgcgtgattattcatttttatgactgcttaggttaattgtatttttggatgac 214  Q
    | ||||| |||||||   | | | |||||||||| ||||||| | |||| | |||||||| ||||||||| |||||| |||||||||||||||| |||||    
T  29899733 gattgaatttatgttcgtttggatatgttgttttcattataagttattgagagattattcctttttatgattgcttatgttaattgtatttttgaatgac 29899832  T
Q  215 tatgagactatctatttgctattattac 242  Q
    |||||||||||||||| |||||| ||||    
T  29899833 tatgagactatctattggctattgttac 29899860  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 207
Target Start/End: Complemental strand, 29476082 - 29475931
Alignment:
Q  57 ttacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaacttatgtttagtagtagatgttgtttt-attata 155  Q
    |||| ||||||||||||||||||| ||||||||||||||| || || ||| ||||||||||||||| ||||||| | |  || || ||||||| ||| ||    
T  29476082 ttactttgaaagcttagtttcaattttttgaaagtaagtttctcttttatagtttacttgtttgaatttatgttcatttttatattttgttttcatttta 29475983  T
Q  156 attgattgcgtgattattcatttttatgactgcttaggttaattgtattttt 207  Q
    || ||||| |||| |||| |||||||||| ||||| | || |||||||||||    
T  29475982 atagattgagtgagtattgatttttatgattgcttggattgattgtattttt 29475931  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 29445398 - 29445334
Alignment:
Q  57 ttacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttga 121  Q
    |||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||||    
T  29445398 ttacgttgaaagcttagtttcaattttttgaaagtaagttcctgttttatggtttacttgtttga 29445334  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 213
Target Start/End: Complemental strand, 29453893 - 29453742
Alignment:
Q  63 tgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaacttatgtttagtagtagatgttgtttt-attataattgat 161  Q
    |||||||||||||||||| || |||||||||||| ||  ||| ||||||| ||||||||| ||   || | | ||| |||||||||| |||||||| |||    
T  29453893 tgaaagcttagtttcaattttatgaaagtaagttcctcctctgtggtttagttgtttgaattttcattcatttgtatatgttgttttcattataatcgat 29453794  T
Q  162 tgcgtgattattcatttttatgactgcttaggttaattgtatttttggatga 213  Q
    || || | ||||| ||||||||| ||||||| || |||||||||||| ||||    
T  29453793 tgagtaaatattcgtttttatgattgcttagattgattgtatttttgaatga 29453742  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 29430757 - 29430603
Alignment:
Q  64 gaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaacttatgtttagtagtagatgttgtttt-attataattgatt 162  Q
    ||||||||||||||| | || |||||||||||| ||  ||| ||||||||||||||||| ||   || | | ||| | |||||||| |||||||| ||||    
T  29430757 gaaagcttagtttcagttttatgaaagtaagttcctcctctgtggtttacttgtttgaattttcattcatttgtatacgttgttttcattataatcgatt 29430658  T
Q  163 gcgtgattattcatttttatgactgcttaggttaattgtatttttggatgactat 217  Q
    | |||| |||||  |||| ||| ||||||| || |||||| ||||| ||||||||    
T  29430657 gagtgaatattcgattttctgattgcttagattgattgtaattttgaatgactat 29430603  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 29885547 - 29885601
Alignment:
Q  176 tttttatgactgcttaggttaattgtatttttggatgactatgagactatctatt 230  Q
    ||||||||| |||||| |||||||||||||||| |||||||||| ||||||||||    
T  29885547 tttttatgattgcttaagttaattgtatttttgaatgactatgacactatctatt 29885601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 29459803 - 29459674
Alignment:
Q  61 gttgaaagcttagtttcaatattttgaaagtaagttgcttttctatgg-----tttacttgtttgaacttatgtttagtagtagatgttgtttt-attat 154  Q
    |||||||||||| ||||||| |||| |||||||||| || || |||||     |||||||||||||| ||||||| | | ||| |||||||||| ||| |    
T  29459803 gttgaaagcttaatttcaatttttttaaagtaagttcctcttttatggtttaatttacttgtttgaatttatgttcatttgtatatgttgttttcatttt 29459704  T
Q  155 aattgattgcgtgattattcatttttatga 184  Q
    ||| ||||| |||| |||| ||||||||||    
T  29459703 aatagattgagtgaatatttatttttatga 29459674  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 19887486 - 19887418
Alignment:
Q  54 ggattacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaa 122  Q
    |||||| |||||||||||||||||||| |||||| |||||||| || ||| ||| |||| |||||||||    
T  19887486 ggattatgttgaaagcttagtttcaatcttttgagagtaagtttctattcaatgatttaattgtttgaa 19887418  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 29872022 - 29872090
Alignment:
Q  56 attacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaact 124  Q
    |||| |||||||| ||||||||||| ||||||||||||||| || | | ||||||||||||||| ||||    
T  29872022 attatgttgaaagtttagtttcaattttttgaaagtaagttcctctcccatggtttacttgtttaaact 29872090  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 29921768 - 29921692
Alignment:
Q  54 ggattacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaacttatgtt 130  Q
    |||||| ||||||||||||||| |||| ||||||||||||||| || || | || |||||||||||| | |||||||    
T  29921768 ggattatgttgaaagcttagttccaattttttgaaagtaagttcctattatgtgatttacttgtttggatttatgtt 29921692  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 29881565 - 29881605
Alignment:
Q  56 attacgttgaaagcttagtttcaatattttgaaagtaagtt 96  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  29881565 attatgttgaaagcttagtttcaattttttgaaagtaagtt 29881605  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 19779897 - 19779965
Alignment:
Q  54 ggattacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaa 122  Q
    |||||| |||||||||||||||||||  |||||| |||||||| || ||| ||| ||||  ||||||||    
T  19779897 ggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttcaatgatttaactgtttgaa 19779965  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 3560726 - 3560658
Alignment:
Q  61 gttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaacttatgt 129  Q
    |||||||||||| ||||||| | ||||||||||||| || |||  ||||||||||||||||| ||||||    
T  3560726 gttgaaagcttaatttcaatctgttgaaagtaagttcctcttcgttggtttacttgtttgaatttatgt 3560658  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 53429876 - 53429810
Alignment:
Q  56 attacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaa 122  Q
    ||||| |||| |||||||||||||| |||||||| |||||| || ||  ||||||||||||||||||    
T  53429876 attacattgagagcttagtttcaattttttgaaattaagttcctctttcatggtttacttgtttgaa 53429810  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 29945855 - 29945896
Alignment:
Q  55 gattacgttgaaagcttagtttcaatattttgaaagtaagtt 96  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  29945855 gattatgttgaaagcttagttccaatattttgaaagtaagtt 29945896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 3558067 - 3558112
Alignment:
Q  84 ttgaaagtaagttgcttttctatggtttacttgtttgaacttatgt 129  Q
    ||||||||||||| || |||||| ||||||||||||||| ||||||    
T  3558067 ttgaaagtaagttcctcttctatcgtttacttgtttgaatttatgt 3558112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 29571592 - 29571551
Alignment:
Q  55 gattacgttgaaagcttagtttcaatattttgaaagtaagtt 96  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  29571592 gattatgttgaaagcttagttccaatattttgaaagtaagtt 29571551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 29578381 - 29578340
Alignment:
Q  55 gattacgttgaaagcttagtttcaatattttgaaagtaagtt 96  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  29578381 gattatgttgaaagcttagttccaatattttgaaagtaagtt 29578340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 29580936 - 29580895
Alignment:
Q  55 gattacgttgaaagcttagtttcaatattttgaaagtaagtt 96  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  29580936 gattatgttgaaagcttagttccaatattttgaaagtaagtt 29580895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 29610225 - 29610184
Alignment:
Q  55 gattacgttgaaagcttagtttcaatattttgaaagtaagtt 96  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  29610225 gattatgttgaaagcttagttccaatattttgaaagtaagtt 29610184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 4571206 - 4571275
Alignment:
Q  53 tggattacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaa 122  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||| || ||| || ||||||  |||||||    
T  4571206 tggattatgttgaaagcttagttccaattttttgaaagtaagtttctcttccattgtttacgggtttgaa 4571275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 4014727 - 4014655
Alignment:
Q  55 gattacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaacttat 127  Q
    ||||| ||||||||||||||| |||| ||||||||||||||| || ||  || |||||| |||||||| ||||    
T  4014727 gattatgttgaaagcttagttccaattttttgaaagtaagtttctctttcattgtttacgtgtttgaatttat 4014655  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 17563942 - 17563872
Alignment:
Q  62 ttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaacttatgttta 132  Q
    |||||||||||||| | || ||||||||||||||| || ||| | ||||||||||||| ||  ||||||||    
T  17563942 ttgaaagcttagttcctattttttgaaagtaagttcctcttccacggtttacttgttttaatctatgttta 17563872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 4016561 - 4016497
Alignment:
Q  55 gattacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgttt 119  Q
    ||||| |||||||| |||||| |||| ||||||||||||||| || ||| || |||||| |||||    
T  4016561 gattatgttgaaagtttagttccaattttttgaaagtaagtttctcttccattgtttacgtgttt 4016497  T

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Target: scaffold0242 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 13478 - 13414
Alignment:
Q  57 ttacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaa 122  Q
    ||||||||||||||| ||| |||| |||||| |||| ||| || || |||||||||||||||||||    
T  13478 ttacgttgaaagcttggttccaattttttgagagtatgtt-ctcttttatggtttacttgtttgaa 13414  T

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Target: scaffold0242; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 22313 - 22249
Alignment:
Q  57 ttacgttgaaagcttagtttcaatattttgaaagtaagttgcttttctatggtttacttgtttgaa 122  Q
    ||||||||||||||| ||| |||| |||||| |||| ||| || || |||||||||||||||||||    
T  22313 ttacgttgaaagcttggttccaattttttgagagtatgtt-ctcttttatggtttacttgtttgaa 22249  T

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